Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04910 and HMPREF1058_RS04905 are separated by 75 nucleotides HMPREF1058_RS04905 and HMPREF1058_RS04900 are separated by 51 nucleotides HMPREF1058_RS04900 and HMPREF1058_RS04895 are separated by 57 nucleotides HMPREF1058_RS04895 and HMPREF1058_RS0119900 are separated by 55 nucleotides
HMPREF1058_RS04910: HMPREF1058_RS04910 - hypothetical protein, at 293,374 to 293,997
_RS04910
HMPREF1058_RS04905: HMPREF1058_RS04905 - hypothetical protein, at 294,073 to 294,498
_RS04905
HMPREF1058_RS04900: HMPREF1058_RS04900 - ankyrin repeat domain-containing protein, at 294,550 to 295,185
_RS04900
HMPREF1058_RS04895: HMPREF1058_RS04895 - SMI1/KNR4 family protein, at 295,243 to 295,842
_RS04895
HMPREF1058_RS0119900: HMPREF1058_RS0119900 - hypothetical protein, at 295,898 to 296,521
_RS0119900
Position (kb) 294
295
296 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 293.587 kb on - strand, within HMPREF1058_RS04910 at 293.628 kb on + strand, within HMPREF1058_RS04910 at 293.628 kb on + strand, within HMPREF1058_RS04910 at 293.629 kb on - strand, within HMPREF1058_RS04910 at 293.629 kb on - strand, within HMPREF1058_RS04910 at 293.658 kb on - strand, within HMPREF1058_RS04910 at 293.679 kb on + strand, within HMPREF1058_RS04910 at 293.824 kb on + strand, within HMPREF1058_RS04910 at 293.953 kb on - strand at 293.970 kb on + strand at 294.004 kb on + strand at 294.056 kb on + strand at 294.057 kb on - strand at 294.152 kb on + strand, within HMPREF1058_RS04905 at 294.212 kb on + strand, within HMPREF1058_RS04905 at 294.213 kb on - strand, within HMPREF1058_RS04905 at 294.237 kb on - strand, within HMPREF1058_RS04905 at 294.244 kb on - strand, within HMPREF1058_RS04905 at 294.248 kb on + strand, within HMPREF1058_RS04905 at 294.248 kb on + strand, within HMPREF1058_RS04905 at 294.266 kb on + strand, within HMPREF1058_RS04905 at 294.270 kb on + strand, within HMPREF1058_RS04905 at 294.270 kb on + strand, within HMPREF1058_RS04905 at 294.270 kb on + strand, within HMPREF1058_RS04905 at 294.271 kb on - strand, within HMPREF1058_RS04905 at 294.271 kb on - strand, within HMPREF1058_RS04905 at 294.271 kb on - strand, within HMPREF1058_RS04905 at 294.271 kb on - strand, within HMPREF1058_RS04905 at 294.286 kb on + strand, within HMPREF1058_RS04905 at 294.287 kb on - strand, within HMPREF1058_RS04905 at 294.291 kb on - strand, within HMPREF1058_RS04905 at 294.425 kb on - strand, within HMPREF1058_RS04905 at 294.456 kb on - strand at 294.539 kb on - strand at 294.560 kb on + strand at 294.560 kb on + strand at 294.561 kb on - strand at 294.573 kb on - strand at 294.637 kb on - strand, within HMPREF1058_RS04900 at 294.640 kb on - strand, within HMPREF1058_RS04900 at 294.739 kb on - strand, within HMPREF1058_RS04900 at 294.774 kb on - strand, within HMPREF1058_RS04900 at 294.774 kb on - strand, within HMPREF1058_RS04900 at 294.812 kb on + strand, within HMPREF1058_RS04900 at 294.817 kb on + strand, within HMPREF1058_RS04900 at 294.832 kb on + strand, within HMPREF1058_RS04900 at 294.842 kb on + strand, within HMPREF1058_RS04900 at 294.843 kb on - strand, within HMPREF1058_RS04900 at 294.855 kb on - strand, within HMPREF1058_RS04900 at 294.858 kb on + strand, within HMPREF1058_RS04900 at 294.889 kb on + strand, within HMPREF1058_RS04900 at 294.889 kb on + strand, within HMPREF1058_RS04900 at 294.890 kb on - strand, within HMPREF1058_RS04900 at 294.890 kb on - strand, within HMPREF1058_RS04900 at 294.911 kb on + strand, within HMPREF1058_RS04900 at 294.924 kb on + strand, within HMPREF1058_RS04900 at 294.951 kb on - strand, within HMPREF1058_RS04900 at 294.951 kb on - strand, within HMPREF1058_RS04900 at 294.951 kb on - strand, within HMPREF1058_RS04900 at 294.968 kb on + strand, within HMPREF1058_RS04900 at 294.980 kb on - strand, within HMPREF1058_RS04900 at 294.986 kb on + strand, within HMPREF1058_RS04900 at 294.986 kb on + strand, within HMPREF1058_RS04900 at 294.987 kb on - strand, within HMPREF1058_RS04900 at 295.014 kb on + strand, within HMPREF1058_RS04900 at 295.022 kb on + strand, within HMPREF1058_RS04900 at 295.023 kb on - strand, within HMPREF1058_RS04900 at 295.068 kb on - strand, within HMPREF1058_RS04900 at 295.220 kb on - strand at 295.253 kb on + strand at 295.285 kb on + strand at 295.286 kb on - strand at 295.286 kb on - strand at 295.286 kb on - strand at 295.287 kb on + strand at 295.291 kb on - strand at 295.293 kb on - strand at 295.460 kb on + strand, within HMPREF1058_RS04895 at 295.507 kb on + strand, within HMPREF1058_RS04895 at 295.530 kb on - strand, within HMPREF1058_RS04895 at 295.530 kb on - strand, within HMPREF1058_RS04895 at 295.530 kb on - strand, within HMPREF1058_RS04895 at 295.584 kb on + strand, within HMPREF1058_RS04895 at 295.584 kb on + strand, within HMPREF1058_RS04895 at 295.584 kb on + strand, within HMPREF1058_RS04895 at 295.585 kb on - strand, within HMPREF1058_RS04895 at 295.597 kb on + strand, within HMPREF1058_RS04895 at 295.597 kb on + strand at 295.598 kb on - strand, within HMPREF1058_RS04895 at 295.598 kb on - strand, within HMPREF1058_RS04895 at 295.600 kb on - strand, within HMPREF1058_RS04895 at 295.608 kb on + strand, within HMPREF1058_RS04895 at 295.608 kb on + strand, within HMPREF1058_RS04895 at 295.612 kb on - strand, within HMPREF1058_RS04895 at 295.612 kb on - strand, within HMPREF1058_RS04895 at 295.672 kb on - strand, within HMPREF1058_RS04895 at 295.672 kb on - strand, within HMPREF1058_RS04895 at 295.713 kb on - strand, within HMPREF1058_RS04895 at 295.761 kb on + strand, within HMPREF1058_RS04895 at 295.761 kb on + strand, within HMPREF1058_RS04895 at 295.762 kb on - strand, within HMPREF1058_RS04895 at 295.770 kb on - strand, within HMPREF1058_RS04895 at 295.822 kb on - strand at 295.827 kb on + strand at 295.917 kb on + strand at 295.963 kb on - strand, within HMPREF1058_RS0119900 at 295.981 kb on + strand, within HMPREF1058_RS0119900 at 296.003 kb on + strand, within HMPREF1058_RS0119900 at 296.028 kb on + strand, within HMPREF1058_RS0119900 at 296.028 kb on + strand, within HMPREF1058_RS0119900 at 296.053 kb on + strand, within HMPREF1058_RS0119900 at 296.054 kb on - strand, within HMPREF1058_RS0119900 at 296.056 kb on - strand, within HMPREF1058_RS0119900 at 296.056 kb on - strand, within HMPREF1058_RS0119900 at 296.056 kb on - strand, within HMPREF1058_RS0119900 at 296.077 kb on - strand, within HMPREF1058_RS0119900 at 296.077 kb on - strand, within HMPREF1058_RS0119900 at 296.077 kb on - strand, within HMPREF1058_RS0119900 at 296.124 kb on + strand, within HMPREF1058_RS0119900 at 296.140 kb on + strand, within HMPREF1058_RS0119900 at 296.179 kb on + strand, within HMPREF1058_RS0119900
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) remove 293,587 - HMPREF1058_RS04910 0.34 -1.2 293,628 + HMPREF1058_RS04910 0.41 +1.5 293,628 + HMPREF1058_RS04910 0.41 -1.3 293,629 - HMPREF1058_RS04910 0.41 -1.0 293,629 - HMPREF1058_RS04910 0.41 -0.5 293,658 - HMPREF1058_RS04910 0.46 -0.7 293,679 + HMPREF1058_RS04910 0.49 -0.6 293,824 + HMPREF1058_RS04910 0.72 -1.2 293,953 - -0.4 293,970 + +3.5 294,004 + +0.5 294,056 + -0.1 294,057 - +0.8 294,152 + HMPREF1058_RS04905 0.19 -0.2 294,212 + HMPREF1058_RS04905 0.33 -1.5 294,213 - HMPREF1058_RS04905 0.33 -0.3 294,237 - HMPREF1058_RS04905 0.38 -2.4 294,244 - HMPREF1058_RS04905 0.40 +0.3 294,248 + HMPREF1058_RS04905 0.41 -0.3 294,248 + HMPREF1058_RS04905 0.41 +0.3 294,266 + HMPREF1058_RS04905 0.45 -1.4 294,270 + HMPREF1058_RS04905 0.46 -0.4 294,270 + HMPREF1058_RS04905 0.46 -1.4 294,270 + HMPREF1058_RS04905 0.46 +0.0 294,271 - HMPREF1058_RS04905 0.46 -0.8 294,271 - HMPREF1058_RS04905 0.46 +0.8 294,271 - HMPREF1058_RS04905 0.46 -1.1 294,271 - HMPREF1058_RS04905 0.46 -0.7 294,286 + HMPREF1058_RS04905 0.50 -0.5 294,287 - HMPREF1058_RS04905 0.50 -0.2 294,291 - HMPREF1058_RS04905 0.51 -0.5 294,425 - HMPREF1058_RS04905 0.83 +1.0 294,456 - -1.0 294,539 - -0.0 294,560 + -0.5 294,560 + -0.8 294,561 - +0.1 294,573 - -1.3 294,637 - HMPREF1058_RS04900 0.14 -0.2 294,640 - HMPREF1058_RS04900 0.14 +0.4 294,739 - HMPREF1058_RS04900 0.30 +0.5 294,774 - HMPREF1058_RS04900 0.35 -0.8 294,774 - HMPREF1058_RS04900 0.35 -0.2 294,812 + HMPREF1058_RS04900 0.41 -1.2 294,817 + HMPREF1058_RS04900 0.42 +0.1 294,832 + HMPREF1058_RS04900 0.44 -0.5 294,842 + HMPREF1058_RS04900 0.46 -0.1 294,843 - HMPREF1058_RS04900 0.46 +0.3 294,855 - HMPREF1058_RS04900 0.48 -0.2 294,858 + HMPREF1058_RS04900 0.48 +0.5 294,889 + HMPREF1058_RS04900 0.53 -1.3 294,889 + HMPREF1058_RS04900 0.53 +0.9 294,890 - HMPREF1058_RS04900 0.53 +0.6 294,890 - HMPREF1058_RS04900 0.53 +0.4 294,911 + HMPREF1058_RS04900 0.57 -0.8 294,924 + HMPREF1058_RS04900 0.59 +0.6 294,951 - HMPREF1058_RS04900 0.63 -0.2 294,951 - HMPREF1058_RS04900 0.63 +1.2 294,951 - HMPREF1058_RS04900 0.63 -0.5 294,968 + HMPREF1058_RS04900 0.66 -0.5 294,980 - HMPREF1058_RS04900 0.68 -0.5 294,986 + HMPREF1058_RS04900 0.69 -0.2 294,986 + HMPREF1058_RS04900 0.69 -0.5 294,987 - HMPREF1058_RS04900 0.69 +0.0 295,014 + HMPREF1058_RS04900 0.73 +0.8 295,022 + HMPREF1058_RS04900 0.74 -0.0 295,023 - HMPREF1058_RS04900 0.74 +0.4 295,068 - HMPREF1058_RS04900 0.81 +0.4 295,220 - +0.1 295,253 + -0.2 295,285 + +0.3 295,286 - -0.0 295,286 - +0.3 295,286 - +0.9 295,287 + -0.4 295,291 - +0.5 295,293 - +0.4 295,460 + HMPREF1058_RS04895 0.36 -1.3 295,507 + HMPREF1058_RS04895 0.44 +0.5 295,530 - HMPREF1058_RS04895 0.48 -0.4 295,530 - HMPREF1058_RS04895 0.48 +1.2 295,530 - HMPREF1058_RS04895 0.48 -0.4 295,584 + HMPREF1058_RS04895 0.57 +1.8 295,584 + HMPREF1058_RS04895 0.57 +0.6 295,584 + HMPREF1058_RS04895 0.57 -0.0 295,585 - HMPREF1058_RS04895 0.57 -0.2 295,597 + HMPREF1058_RS04895 0.59 -0.2 295,597 + +2.5 295,598 - HMPREF1058_RS04895 0.59 +1.9 295,598 - HMPREF1058_RS04895 0.59 -0.1 295,600 - HMPREF1058_RS04895 0.59 +4.5 295,608 + HMPREF1058_RS04895 0.61 -1.0 295,608 + HMPREF1058_RS04895 0.61 +0.6 295,612 - HMPREF1058_RS04895 0.61 +0.2 295,612 - HMPREF1058_RS04895 0.61 +0.8 295,672 - HMPREF1058_RS04895 0.71 +0.7 295,672 - HMPREF1058_RS04895 0.71 -1.0 295,713 - HMPREF1058_RS04895 0.78 +0.2 295,761 + HMPREF1058_RS04895 0.86 -0.8 295,761 + HMPREF1058_RS04895 0.86 +0.8 295,762 - HMPREF1058_RS04895 0.86 +0.5 295,770 - HMPREF1058_RS04895 0.88 -0.9 295,822 - -0.1 295,827 + +1.0 295,917 + +1.7 295,963 - HMPREF1058_RS0119900 0.10 -0.2 295,981 + HMPREF1058_RS0119900 0.13 -0.5 296,003 + HMPREF1058_RS0119900 0.17 +0.7 296,028 + HMPREF1058_RS0119900 0.21 -1.3 296,028 + HMPREF1058_RS0119900 0.21 -0.2 296,053 + HMPREF1058_RS0119900 0.25 +1.2 296,054 - HMPREF1058_RS0119900 0.25 +0.6 296,056 - HMPREF1058_RS0119900 0.25 +0.3 296,056 - HMPREF1058_RS0119900 0.25 -0.8 296,056 - HMPREF1058_RS0119900 0.25 -0.3 296,077 - HMPREF1058_RS0119900 0.29 +1.5 296,077 - HMPREF1058_RS0119900 0.29 +0.8 296,077 - HMPREF1058_RS0119900 0.29 +0.5 296,124 + HMPREF1058_RS0119900 0.36 -0.0 296,140 + HMPREF1058_RS0119900 0.39 -0.8 296,179 + HMPREF1058_RS0119900 0.45 +0.2
Or see this region's nucleotide sequence