Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02835 and HMPREF1058_RS02830 overlap by 4 nucleotides HMPREF1058_RS02830 and HMPREF1058_RS02825 are separated by 98 nucleotides
HMPREF1058_RS02835: HMPREF1058_RS02835 - family 20 glycosylhydrolase, at 78,965 to 81,046
_RS02835
HMPREF1058_RS02830: HMPREF1058_RS02830 - DUF4982 domain-containing protein, at 81,043 to 83,490
_RS02830
HMPREF1058_RS02825: HMPREF1058_RS02825 - RagB/SusD family nutrient uptake outer membrane protein, at 83,589 to 85,130
_RS02825
Position (kb) 81
82
83
84 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 80.060 kb on - strand, within HMPREF1058_RS02835 at 80.060 kb on - strand, within HMPREF1058_RS02835 at 80.161 kb on + strand, within HMPREF1058_RS02835 at 80.204 kb on + strand, within HMPREF1058_RS02835 at 80.206 kb on + strand, within HMPREF1058_RS02835 at 80.206 kb on + strand, within HMPREF1058_RS02835 at 80.207 kb on - strand, within HMPREF1058_RS02835 at 80.210 kb on + strand, within HMPREF1058_RS02835 at 80.210 kb on + strand, within HMPREF1058_RS02835 at 80.215 kb on - strand, within HMPREF1058_RS02835 at 80.271 kb on + strand, within HMPREF1058_RS02835 at 80.271 kb on + strand, within HMPREF1058_RS02835 at 80.418 kb on - strand, within HMPREF1058_RS02835 at 80.507 kb on - strand, within HMPREF1058_RS02835 at 80.644 kb on + strand, within HMPREF1058_RS02835 at 80.644 kb on + strand, within HMPREF1058_RS02835 at 80.649 kb on - strand, within HMPREF1058_RS02835 at 80.701 kb on - strand, within HMPREF1058_RS02835 at 80.708 kb on - strand, within HMPREF1058_RS02835 at 80.750 kb on - strand at 80.764 kb on - strand, within HMPREF1058_RS02835 at 80.764 kb on - strand, within HMPREF1058_RS02835 at 80.854 kb on + strand at 80.897 kb on - strand at 80.898 kb on + strand at 80.899 kb on - strand at 80.899 kb on - strand at 80.913 kb on + strand at 80.982 kb on - strand at 81.012 kb on - strand at 81.012 kb on - strand at 81.092 kb on - strand at 81.133 kb on + strand at 81.136 kb on + strand at 81.190 kb on - strand at 81.295 kb on + strand, within HMPREF1058_RS02830 at 81.295 kb on + strand, within HMPREF1058_RS02830 at 81.345 kb on - strand, within HMPREF1058_RS02830 at 81.487 kb on - strand, within HMPREF1058_RS02830 at 81.489 kb on - strand, within HMPREF1058_RS02830 at 81.524 kb on - strand, within HMPREF1058_RS02830 at 81.530 kb on - strand, within HMPREF1058_RS02830 at 81.549 kb on - strand, within HMPREF1058_RS02830 at 81.549 kb on - strand, within HMPREF1058_RS02830 at 81.650 kb on + strand, within HMPREF1058_RS02830 at 81.674 kb on - strand, within HMPREF1058_RS02830 at 81.682 kb on - strand, within HMPREF1058_RS02830 at 81.724 kb on + strand, within HMPREF1058_RS02830 at 81.725 kb on - strand, within HMPREF1058_RS02830 at 81.895 kb on - strand, within HMPREF1058_RS02830 at 81.912 kb on + strand, within HMPREF1058_RS02830 at 81.913 kb on - strand, within HMPREF1058_RS02830 at 81.913 kb on - strand, within HMPREF1058_RS02830 at 81.991 kb on + strand, within HMPREF1058_RS02830 at 81.992 kb on - strand, within HMPREF1058_RS02830 at 82.008 kb on - strand, within HMPREF1058_RS02830 at 82.019 kb on - strand, within HMPREF1058_RS02830 at 82.049 kb on + strand, within HMPREF1058_RS02830 at 82.069 kb on + strand, within HMPREF1058_RS02830 at 82.118 kb on + strand, within HMPREF1058_RS02830 at 82.155 kb on + strand, within HMPREF1058_RS02830 at 82.276 kb on - strand, within HMPREF1058_RS02830 at 82.403 kb on - strand, within HMPREF1058_RS02830 at 82.436 kb on + strand, within HMPREF1058_RS02830 at 82.437 kb on - strand, within HMPREF1058_RS02830 at 82.458 kb on + strand, within HMPREF1058_RS02830 at 82.480 kb on - strand, within HMPREF1058_RS02830 at 82.570 kb on + strand, within HMPREF1058_RS02830 at 82.579 kb on + strand, within HMPREF1058_RS02830 at 82.580 kb on - strand, within HMPREF1058_RS02830 at 82.652 kb on - strand, within HMPREF1058_RS02830 at 82.656 kb on + strand, within HMPREF1058_RS02830 at 82.657 kb on - strand, within HMPREF1058_RS02830 at 82.677 kb on + strand, within HMPREF1058_RS02830 at 82.696 kb on + strand, within HMPREF1058_RS02830 at 82.698 kb on + strand, within HMPREF1058_RS02830 at 82.698 kb on + strand, within HMPREF1058_RS02830 at 82.698 kb on + strand, within HMPREF1058_RS02830 at 82.698 kb on + strand, within HMPREF1058_RS02830 at 82.698 kb on + strand, within HMPREF1058_RS02830 at 82.699 kb on - strand, within HMPREF1058_RS02830 at 82.699 kb on - strand, within HMPREF1058_RS02830 at 82.699 kb on - strand, within HMPREF1058_RS02830 at 82.699 kb on - strand, within HMPREF1058_RS02830 at 82.699 kb on - strand, within HMPREF1058_RS02830 at 82.699 kb on - strand, within HMPREF1058_RS02830 at 82.699 kb on - strand, within HMPREF1058_RS02830 at 82.885 kb on - strand, within HMPREF1058_RS02830 at 82.888 kb on + strand, within HMPREF1058_RS02830 at 82.895 kb on + strand, within HMPREF1058_RS02830 at 82.979 kb on + strand, within HMPREF1058_RS02830 at 83.007 kb on + strand, within HMPREF1058_RS02830 at 83.008 kb on - strand, within HMPREF1058_RS02830 at 83.010 kb on - strand, within HMPREF1058_RS02830 at 83.048 kb on - strand, within HMPREF1058_RS02830 at 83.079 kb on - strand, within HMPREF1058_RS02830 at 83.093 kb on + strand, within HMPREF1058_RS02830 at 83.096 kb on - strand, within HMPREF1058_RS02830 at 83.096 kb on - strand, within HMPREF1058_RS02830 at 83.168 kb on - strand, within HMPREF1058_RS02830 at 83.297 kb on + strand at 83.297 kb on + strand at 83.308 kb on + strand at 83.309 kb on - strand at 83.358 kb on - strand at 83.422 kb on + strand at 83.462 kb on - strand at 83.565 kb on - strand at 83.566 kb on + strand at 83.566 kb on + strand at 83.566 kb on + strand at 83.567 kb on - strand at 83.567 kb on - strand at 83.568 kb on + strand at 83.571 kb on - strand at 83.575 kb on + strand at 83.575 kb on + strand at 83.590 kb on + strand at 83.609 kb on + strand at 83.609 kb on + strand at 83.653 kb on + strand at 83.654 kb on - strand at 83.663 kb on + strand at 83.699 kb on + strand at 83.724 kb on + strand at 83.805 kb on + strand, within HMPREF1058_RS02825 at 83.846 kb on + strand, within HMPREF1058_RS02825 at 83.848 kb on + strand, within HMPREF1058_RS02825 at 83.882 kb on + strand, within HMPREF1058_RS02825 at 83.885 kb on + strand, within HMPREF1058_RS02825 at 83.885 kb on + strand, within HMPREF1058_RS02825 at 83.886 kb on - strand, within HMPREF1058_RS02825 at 83.894 kb on + strand, within HMPREF1058_RS02825 at 83.895 kb on - strand, within HMPREF1058_RS02825 at 83.921 kb on + strand, within HMPREF1058_RS02825 at 83.923 kb on + strand, within HMPREF1058_RS02825 at 83.924 kb on - strand, within HMPREF1058_RS02825 at 84.109 kb on + strand, within HMPREF1058_RS02825 at 84.212 kb on - strand, within HMPREF1058_RS02825 at 84.325 kb on - strand, within HMPREF1058_RS02825 at 84.390 kb on + strand, within HMPREF1058_RS02825 at 84.397 kb on + strand, within HMPREF1058_RS02825 at 84.461 kb on - strand, within HMPREF1058_RS02825 at 84.468 kb on + strand, within HMPREF1058_RS02825 at 84.468 kb on + strand, within HMPREF1058_RS02825 at 84.468 kb on + strand, within HMPREF1058_RS02825 at 84.469 kb on - strand, within HMPREF1058_RS02825
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) remove 80,060 - HMPREF1058_RS02835 0.53 +0.6 80,060 - HMPREF1058_RS02835 0.53 -0.5 80,161 + HMPREF1058_RS02835 0.57 -0.2 80,204 + HMPREF1058_RS02835 0.60 +0.2 80,206 + HMPREF1058_RS02835 0.60 +3.7 80,206 + HMPREF1058_RS02835 0.60 -1.4 80,207 - HMPREF1058_RS02835 0.60 +0.8 80,210 + HMPREF1058_RS02835 0.60 -0.7 80,210 + HMPREF1058_RS02835 0.60 -0.1 80,215 - HMPREF1058_RS02835 0.60 -0.5 80,271 + HMPREF1058_RS02835 0.63 -0.3 80,271 + HMPREF1058_RS02835 0.63 +0.4 80,418 - HMPREF1058_RS02835 0.70 +0.4 80,507 - HMPREF1058_RS02835 0.74 -0.3 80,644 + HMPREF1058_RS02835 0.81 -1.3 80,644 + HMPREF1058_RS02835 0.81 -0.1 80,649 - HMPREF1058_RS02835 0.81 -0.0 80,701 - HMPREF1058_RS02835 0.83 +1.9 80,708 - HMPREF1058_RS02835 0.84 -0.4 80,750 - +0.4 80,764 - HMPREF1058_RS02835 0.86 +2.9 80,764 - HMPREF1058_RS02835 0.86 -0.1 80,854 + -0.3 80,897 - +0.9 80,898 + -0.1 80,899 - -0.2 80,899 - +0.8 80,913 + +1.9 80,982 - +0.9 81,012 - +0.8 81,012 - -0.9 81,092 - +4.2 81,133 + -0.3 81,136 + -0.6 81,190 - -0.2 81,295 + HMPREF1058_RS02830 0.10 -1.0 81,295 + HMPREF1058_RS02830 0.10 -0.4 81,345 - HMPREF1058_RS02830 0.12 -0.0 81,487 - HMPREF1058_RS02830 0.18 +0.7 81,489 - HMPREF1058_RS02830 0.18 +5.4 81,524 - HMPREF1058_RS02830 0.20 +1.2 81,530 - HMPREF1058_RS02830 0.20 -0.6 81,549 - HMPREF1058_RS02830 0.21 -0.7 81,549 - HMPREF1058_RS02830 0.21 -0.9 81,650 + HMPREF1058_RS02830 0.25 +0.1 81,674 - HMPREF1058_RS02830 0.26 -0.1 81,682 - HMPREF1058_RS02830 0.26 -0.5 81,724 + HMPREF1058_RS02830 0.28 +0.2 81,725 - HMPREF1058_RS02830 0.28 +0.7 81,895 - HMPREF1058_RS02830 0.35 +0.1 81,912 + HMPREF1058_RS02830 0.35 -1.4 81,913 - HMPREF1058_RS02830 0.36 +0.8 81,913 - HMPREF1058_RS02830 0.36 +1.9 81,991 + HMPREF1058_RS02830 0.39 +1.3 81,992 - HMPREF1058_RS02830 0.39 +0.7 82,008 - HMPREF1058_RS02830 0.39 -0.7 82,019 - HMPREF1058_RS02830 0.40 -0.9 82,049 + HMPREF1058_RS02830 0.41 -0.8 82,069 + HMPREF1058_RS02830 0.42 +2.4 82,118 + HMPREF1058_RS02830 0.44 -0.7 82,155 + HMPREF1058_RS02830 0.45 +0.7 82,276 - HMPREF1058_RS02830 0.50 -0.9 82,403 - HMPREF1058_RS02830 0.56 +0.3 82,436 + HMPREF1058_RS02830 0.57 +0.2 82,437 - HMPREF1058_RS02830 0.57 +0.5 82,458 + HMPREF1058_RS02830 0.58 +0.5 82,480 - HMPREF1058_RS02830 0.59 -1.0 82,570 + HMPREF1058_RS02830 0.62 -0.0 82,579 + HMPREF1058_RS02830 0.63 -2.7 82,580 - HMPREF1058_RS02830 0.63 +0.2 82,652 - HMPREF1058_RS02830 0.66 +0.1 82,656 + HMPREF1058_RS02830 0.66 +0.2 82,657 - HMPREF1058_RS02830 0.66 +1.2 82,677 + HMPREF1058_RS02830 0.67 -1.3 82,696 + HMPREF1058_RS02830 0.68 -0.1 82,698 + HMPREF1058_RS02830 0.68 -0.0 82,698 + HMPREF1058_RS02830 0.68 +0.1 82,698 + HMPREF1058_RS02830 0.68 -0.5 82,698 + HMPREF1058_RS02830 0.68 +1.1 82,698 + HMPREF1058_RS02830 0.68 -0.2 82,699 - HMPREF1058_RS02830 0.68 +2.8 82,699 - HMPREF1058_RS02830 0.68 -0.1 82,699 - HMPREF1058_RS02830 0.68 -0.2 82,699 - HMPREF1058_RS02830 0.68 -1.1 82,699 - HMPREF1058_RS02830 0.68 -0.9 82,699 - HMPREF1058_RS02830 0.68 -0.4 82,699 - HMPREF1058_RS02830 0.68 -0.2 82,885 - HMPREF1058_RS02830 0.75 -0.4 82,888 + HMPREF1058_RS02830 0.75 +0.2 82,895 + HMPREF1058_RS02830 0.76 -0.1 82,979 + HMPREF1058_RS02830 0.79 +0.9 83,007 + HMPREF1058_RS02830 0.80 -1.6 83,008 - HMPREF1058_RS02830 0.80 +1.2 83,010 - HMPREF1058_RS02830 0.80 +1.0 83,048 - HMPREF1058_RS02830 0.82 -0.8 83,079 - HMPREF1058_RS02830 0.83 -0.3 83,093 + HMPREF1058_RS02830 0.84 -0.5 83,096 - HMPREF1058_RS02830 0.84 +2.2 83,096 - HMPREF1058_RS02830 0.84 -0.6 83,168 - HMPREF1058_RS02830 0.87 -2.0 83,297 + +3.9 83,297 + +0.5 83,308 + +0.3 83,309 - -1.6 83,358 - -0.1 83,422 + -0.8 83,462 - -1.2 83,565 - +0.6 83,566 + +0.4 83,566 + +0.2 83,566 + +0.8 83,567 - +0.7 83,567 - -0.4 83,568 + -0.1 83,571 - -1.0 83,575 + +0.9 83,575 + +0.3 83,590 + -0.1 83,609 + +0.1 83,609 + -1.0 83,653 + +0.5 83,654 - -0.8 83,663 + -1.3 83,699 + -0.8 83,724 + +0.9 83,805 + HMPREF1058_RS02825 0.14 -0.1 83,846 + HMPREF1058_RS02825 0.17 +2.4 83,848 + HMPREF1058_RS02825 0.17 +0.8 83,882 + HMPREF1058_RS02825 0.19 +0.2 83,885 + HMPREF1058_RS02825 0.19 -0.0 83,885 + HMPREF1058_RS02825 0.19 -0.6 83,886 - HMPREF1058_RS02825 0.19 +1.6 83,894 + HMPREF1058_RS02825 0.20 -1.1 83,895 - HMPREF1058_RS02825 0.20 -3.1 83,921 + HMPREF1058_RS02825 0.22 -0.1 83,923 + HMPREF1058_RS02825 0.22 +1.5 83,924 - HMPREF1058_RS02825 0.22 -0.7 84,109 + HMPREF1058_RS02825 0.34 -0.9 84,212 - HMPREF1058_RS02825 0.40 -0.1 84,325 - HMPREF1058_RS02825 0.48 -1.7 84,390 + HMPREF1058_RS02825 0.52 +0.1 84,397 + HMPREF1058_RS02825 0.52 -2.1 84,461 - HMPREF1058_RS02825 0.57 -0.3 84,468 + HMPREF1058_RS02825 0.57 +0.0 84,468 + HMPREF1058_RS02825 0.57 +0.7 84,468 + HMPREF1058_RS02825 0.57 -0.7 84,469 - HMPREF1058_RS02825 0.57 +0.2
Or see this region's nucleotide sequence