Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02545 and HMPREF1058_RS02540 are separated by 34 nucleotides HMPREF1058_RS02540 and HMPREF1058_RS02535 are separated by 20 nucleotides
HMPREF1058_RS02545: HMPREF1058_RS02545 - histidine ammonia-lyase, at 158,079 to 159,575
_RS02545
HMPREF1058_RS02540: HMPREF1058_RS02540 - cyclodeaminase/cyclohydrolase family protein, at 159,610 to 160,233
_RS02540
HMPREF1058_RS02535: HMPREF1058_RS02535 - imidazolonepropionase, at 160,254 to 161,498
_RS02535
Position (kb) 159
160
161 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 158.944 kb on - strand, within HMPREF1058_RS02545 at 158.950 kb on + strand, within HMPREF1058_RS02545 at 158.951 kb on - strand, within HMPREF1058_RS02545 at 158.951 kb on - strand, within HMPREF1058_RS02545 at 158.951 kb on - strand, within HMPREF1058_RS02545 at 159.077 kb on + strand, within HMPREF1058_RS02545 at 159.077 kb on - strand, within HMPREF1058_RS02545 at 159.077 kb on - strand, within HMPREF1058_RS02545 at 159.177 kb on + strand, within HMPREF1058_RS02545 at 159.306 kb on + strand, within HMPREF1058_RS02545 at 159.348 kb on - strand, within HMPREF1058_RS02545 at 159.555 kb on + strand at 159.556 kb on - strand at 159.556 kb on - strand at 159.565 kb on - strand at 159.565 kb on - strand at 159.671 kb on - strand at 159.735 kb on + strand, within HMPREF1058_RS02540 at 159.739 kb on + strand, within HMPREF1058_RS02540 at 159.740 kb on - strand, within HMPREF1058_RS02540 at 159.959 kb on - strand, within HMPREF1058_RS02540 at 160.078 kb on + strand, within HMPREF1058_RS02540 at 160.079 kb on - strand, within HMPREF1058_RS02540 at 160.079 kb on - strand, within HMPREF1058_RS02540 at 160.079 kb on - strand, within HMPREF1058_RS02540 at 160.083 kb on - strand, within HMPREF1058_RS02540 at 160.083 kb on - strand, within HMPREF1058_RS02540 at 160.117 kb on - strand, within HMPREF1058_RS02540 at 160.238 kb on - strand at 160.244 kb on - strand at 160.272 kb on - strand at 160.272 kb on - strand at 160.307 kb on + strand at 160.314 kb on - strand at 160.314 kb on - strand at 160.325 kb on - strand at 160.327 kb on - strand at 160.380 kb on + strand, within HMPREF1058_RS02535 at 160.469 kb on - strand, within HMPREF1058_RS02535 at 160.472 kb on + strand, within HMPREF1058_RS02535 at 160.563 kb on + strand, within HMPREF1058_RS02535 at 160.612 kb on - strand, within HMPREF1058_RS02535 at 160.633 kb on - strand, within HMPREF1058_RS02535 at 160.656 kb on + strand, within HMPREF1058_RS02535 at 160.756 kb on - strand, within HMPREF1058_RS02535 at 160.794 kb on + strand, within HMPREF1058_RS02535 at 160.909 kb on + strand, within HMPREF1058_RS02535 at 160.909 kb on + strand, within HMPREF1058_RS02535 at 160.909 kb on + strand, within HMPREF1058_RS02535 at 160.910 kb on - strand, within HMPREF1058_RS02535 at 161.201 kb on + strand, within HMPREF1058_RS02535 at 161.201 kb on + strand, within HMPREF1058_RS02535 at 161.202 kb on - strand, within HMPREF1058_RS02535 at 161.202 kb on - strand, within HMPREF1058_RS02535 at 161.203 kb on + strand, within HMPREF1058_RS02535 at 161.203 kb on + strand, within HMPREF1058_RS02535 at 161.204 kb on - strand, within HMPREF1058_RS02535 at 161.204 kb on - strand, within HMPREF1058_RS02535
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) remove 158,944 - HMPREF1058_RS02545 0.58 -1.4 158,950 + HMPREF1058_RS02545 0.58 -2.4 158,951 - HMPREF1058_RS02545 0.58 -1.6 158,951 - HMPREF1058_RS02545 0.58 -3.6 158,951 - HMPREF1058_RS02545 0.58 -1.7 159,077 + HMPREF1058_RS02545 0.67 -3.3 159,077 - HMPREF1058_RS02545 0.67 -4.2 159,077 - HMPREF1058_RS02545 0.67 -2.5 159,177 + HMPREF1058_RS02545 0.73 -1.4 159,306 + HMPREF1058_RS02545 0.82 -2.5 159,348 - HMPREF1058_RS02545 0.85 -1.5 159,555 + -1.6 159,556 - -2.2 159,556 - -2.7 159,565 - -1.5 159,565 - -3.3 159,671 - -2.5 159,735 + HMPREF1058_RS02540 0.20 -3.1 159,739 + HMPREF1058_RS02540 0.21 -1.4 159,740 - HMPREF1058_RS02540 0.21 -1.6 159,959 - HMPREF1058_RS02540 0.56 -0.4 160,078 + HMPREF1058_RS02540 0.75 -0.9 160,079 - HMPREF1058_RS02540 0.75 -1.0 160,079 - HMPREF1058_RS02540 0.75 -3.4 160,079 - HMPREF1058_RS02540 0.75 -2.9 160,083 - HMPREF1058_RS02540 0.76 -0.4 160,083 - HMPREF1058_RS02540 0.76 -1.3 160,117 - HMPREF1058_RS02540 0.81 -3.6 160,238 - -1.4 160,244 - -0.5 160,272 - -0.1 160,272 - -1.2 160,307 + -1.1 160,314 - -3.3 160,314 - -1.9 160,325 - -4.7 160,327 - -1.8 160,380 + HMPREF1058_RS02535 0.10 -1.7 160,469 - HMPREF1058_RS02535 0.17 -2.9 160,472 + HMPREF1058_RS02535 0.18 +0.2 160,563 + HMPREF1058_RS02535 0.25 -0.1 160,612 - HMPREF1058_RS02535 0.29 -2.6 160,633 - HMPREF1058_RS02535 0.30 -1.6 160,656 + HMPREF1058_RS02535 0.32 +1.3 160,756 - HMPREF1058_RS02535 0.40 -2.7 160,794 + HMPREF1058_RS02535 0.43 -2.9 160,909 + HMPREF1058_RS02535 0.53 -2.0 160,909 + HMPREF1058_RS02535 0.53 -1.0 160,909 + HMPREF1058_RS02535 0.53 -1.5 160,910 - HMPREF1058_RS02535 0.53 +0.1 161,201 + HMPREF1058_RS02535 0.76 -0.8 161,201 + HMPREF1058_RS02535 0.76 -0.3 161,202 - HMPREF1058_RS02535 0.76 -3.1 161,202 - HMPREF1058_RS02535 0.76 -2.9 161,203 + HMPREF1058_RS02535 0.76 -2.1 161,203 + HMPREF1058_RS02535 0.76 -2.1 161,204 - HMPREF1058_RS02535 0.76 -1.3 161,204 - HMPREF1058_RS02535 0.76 -2.0
Or see this region's nucleotide sequence