Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS01665

Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
73,974	+				-1.7
73,974	+				+1.4
73,974	+				-3.6
73,982	+				-2.3
73,988	+				-2.2
73,993	+				-3.5
73,993	+				-1.7
73,995	+				-0.4
73,995	+				-2.0
74,014	+				-1.3
74,103	+		HMPREF1058_RS01665	0.28	-0.2
74,145	+		HMPREF1058_RS01665	0.39	-0.7
74,175	+		HMPREF1058_RS01665	0.47	-2.8
74,252	+		HMPREF1058_RS01665	0.67	-0.4
74,277	+		HMPREF1058_RS01665	0.74	-1.8
74,277	+		HMPREF1058_RS01665	0.74	-0.2
74,403	+				+0.0
74,403	+				+0.3
74,433	+				-0.0