Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01585 and HMPREF1058_RS01580 are separated by 101 nucleotides HMPREF1058_RS01580 and HMPREF1058_RS01575 overlap by 38 nucleotides HMPREF1058_RS01575 and HMPREF1058_RS01570 are separated by 103 nucleotides
HMPREF1058_RS01585: HMPREF1058_RS01585 - tagaturonate reductase, at 86,882 to 88,321
_RS01585
HMPREF1058_RS01580: HMPREF1058_RS01580 - hypothetical protein, at 88,423 to 88,836
_RS01580
HMPREF1058_RS01575: HMPREF1058_RS01575 - precorrin-2 C(20)-methyltransferase, at 88,799 to 89,527
_RS01575
HMPREF1058_RS01570: HMPREF1058_RS01570 - ABC transporter substrate-binding protein, at 89,631 to 90,782
_RS01570
Position (kb) 88
89
90 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 87.825 kb on - strand, within HMPREF1058_RS01585 at 87.832 kb on + strand, within HMPREF1058_RS01585 at 87.977 kb on + strand, within HMPREF1058_RS01585 at 87.977 kb on + strand, within HMPREF1058_RS01585 at 88.010 kb on + strand, within HMPREF1058_RS01585 at 88.077 kb on - strand, within HMPREF1058_RS01585 at 88.257 kb on + strand at 88.277 kb on - strand at 88.292 kb on - strand at 88.313 kb on - strand at 88.374 kb on + strand at 88.403 kb on - strand at 88.412 kb on - strand at 88.473 kb on + strand, within HMPREF1058_RS01580 at 88.473 kb on + strand, within HMPREF1058_RS01580 at 88.474 kb on - strand, within HMPREF1058_RS01580 at 88.497 kb on + strand, within HMPREF1058_RS01580 at 88.498 kb on - strand, within HMPREF1058_RS01580 at 88.526 kb on - strand, within HMPREF1058_RS01580 at 88.578 kb on - strand, within HMPREF1058_RS01580 at 88.588 kb on + strand, within HMPREF1058_RS01580 at 88.594 kb on - strand, within HMPREF1058_RS01580 at 88.620 kb on + strand, within HMPREF1058_RS01580 at 88.866 kb on - strand at 88.966 kb on - strand, within HMPREF1058_RS01575 at 88.966 kb on - strand, within HMPREF1058_RS01575 at 88.976 kb on + strand, within HMPREF1058_RS01575 at 88.976 kb on + strand, within HMPREF1058_RS01575 at 88.976 kb on + strand, within HMPREF1058_RS01575 at 89.031 kb on + strand, within HMPREF1058_RS01575 at 89.031 kb on + strand, within HMPREF1058_RS01575 at 89.032 kb on - strand, within HMPREF1058_RS01575 at 89.054 kb on - strand, within HMPREF1058_RS01575 at 89.103 kb on - strand, within HMPREF1058_RS01575 at 89.189 kb on + strand, within HMPREF1058_RS01575 at 89.190 kb on - strand, within HMPREF1058_RS01575 at 89.194 kb on - strand, within HMPREF1058_RS01575 at 89.194 kb on - strand, within HMPREF1058_RS01575 at 89.340 kb on - strand at 89.346 kb on - strand, within HMPREF1058_RS01575 at 89.346 kb on - strand, within HMPREF1058_RS01575 at 89.347 kb on + strand, within HMPREF1058_RS01575 at 89.363 kb on + strand, within HMPREF1058_RS01575 at 89.364 kb on - strand, within HMPREF1058_RS01575 at 89.369 kb on - strand, within HMPREF1058_RS01575 at 89.430 kb on + strand, within HMPREF1058_RS01575 at 89.431 kb on - strand, within HMPREF1058_RS01575 at 89.432 kb on + strand, within HMPREF1058_RS01575 at 89.433 kb on - strand, within HMPREF1058_RS01575 at 89.433 kb on - strand at 89.512 kb on - strand at 89.535 kb on - strand at 89.551 kb on + strand at 89.583 kb on - strand at 89.747 kb on + strand, within HMPREF1058_RS01570 at 89.769 kb on + strand at 89.783 kb on + strand, within HMPREF1058_RS01570 at 90.071 kb on + strand, within HMPREF1058_RS01570 at 90.072 kb on - strand, within HMPREF1058_RS01570 at 90.076 kb on + strand, within HMPREF1058_RS01570 at 90.076 kb on + strand, within HMPREF1058_RS01570 at 90.081 kb on - strand, within HMPREF1058_RS01570 at 90.111 kb on - strand, within HMPREF1058_RS01570 at 90.181 kb on + strand, within HMPREF1058_RS01570 at 90.213 kb on - strand, within HMPREF1058_RS01570 at 90.282 kb on - strand, within HMPREF1058_RS01570 at 90.287 kb on + strand, within HMPREF1058_RS01570 at 90.287 kb on + strand, within HMPREF1058_RS01570 at 90.308 kb on + strand, within HMPREF1058_RS01570
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) remove 87,825 - HMPREF1058_RS01585 0.65 -1.0 87,832 + HMPREF1058_RS01585 0.66 -3.9 87,977 + HMPREF1058_RS01585 0.76 -3.0 87,977 + HMPREF1058_RS01585 0.76 -1.0 88,010 + HMPREF1058_RS01585 0.78 -2.9 88,077 - HMPREF1058_RS01585 0.83 -1.9 88,257 + -2.7 88,277 - +1.0 88,292 - -1.2 88,313 - -1.6 88,374 + +1.4 88,403 - +0.1 88,412 - +0.0 88,473 + HMPREF1058_RS01580 0.12 +0.1 88,473 + HMPREF1058_RS01580 0.12 -0.0 88,474 - HMPREF1058_RS01580 0.12 -0.8 88,497 + HMPREF1058_RS01580 0.18 -0.9 88,498 - HMPREF1058_RS01580 0.18 -2.8 88,526 - HMPREF1058_RS01580 0.25 +0.7 88,578 - HMPREF1058_RS01580 0.37 -1.7 88,588 + HMPREF1058_RS01580 0.40 +0.9 88,594 - HMPREF1058_RS01580 0.41 -0.2 88,620 + HMPREF1058_RS01580 0.48 -1.9 88,866 - -1.6 88,966 - HMPREF1058_RS01575 0.23 -1.3 88,966 - HMPREF1058_RS01575 0.23 -2.2 88,976 + HMPREF1058_RS01575 0.24 +0.0 88,976 + HMPREF1058_RS01575 0.24 -2.0 88,976 + HMPREF1058_RS01575 0.24 +0.3 89,031 + HMPREF1058_RS01575 0.32 -4.0 89,031 + HMPREF1058_RS01575 0.32 -0.7 89,032 - HMPREF1058_RS01575 0.32 -3.9 89,054 - HMPREF1058_RS01575 0.35 -2.3 89,103 - HMPREF1058_RS01575 0.42 -2.9 89,189 + HMPREF1058_RS01575 0.53 -2.0 89,190 - HMPREF1058_RS01575 0.54 -2.1 89,194 - HMPREF1058_RS01575 0.54 -0.6 89,194 - HMPREF1058_RS01575 0.54 -1.7 89,340 - +1.6 89,346 - HMPREF1058_RS01575 0.75 -1.2 89,346 - HMPREF1058_RS01575 0.75 -1.7 89,347 + HMPREF1058_RS01575 0.75 +0.3 89,363 + HMPREF1058_RS01575 0.77 +0.0 89,364 - HMPREF1058_RS01575 0.78 +0.3 89,369 - HMPREF1058_RS01575 0.78 -3.2 89,430 + HMPREF1058_RS01575 0.87 +0.4 89,431 - HMPREF1058_RS01575 0.87 -0.4 89,432 + HMPREF1058_RS01575 0.87 -2.4 89,433 - HMPREF1058_RS01575 0.87 -0.6 89,433 - +0.3 89,512 - -1.8 89,535 - +1.9 89,551 + +0.0 89,583 - -2.7 89,747 + HMPREF1058_RS01570 0.10 -0.4 89,769 + +1.6 89,783 + HMPREF1058_RS01570 0.13 -2.3 90,071 + HMPREF1058_RS01570 0.38 -0.2 90,072 - HMPREF1058_RS01570 0.38 -3.7 90,076 + HMPREF1058_RS01570 0.39 -2.3 90,076 + HMPREF1058_RS01570 0.39 -1.5 90,081 - HMPREF1058_RS01570 0.39 +0.6 90,111 - HMPREF1058_RS01570 0.42 -2.0 90,181 + HMPREF1058_RS01570 0.48 -0.6 90,213 - HMPREF1058_RS01570 0.51 -1.4 90,282 - HMPREF1058_RS01570 0.57 +0.0 90,287 + HMPREF1058_RS01570 0.57 -0.9 90,287 + HMPREF1058_RS01570 0.57 -1.1 90,308 + HMPREF1058_RS01570 0.59 -1.2
Or see this region's nucleotide sequence