Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01290 and HMPREF1058_RS01285 are separated by 51 nucleotides HMPREF1058_RS01285 and HMPREF1058_RS01280 overlap by 7 nucleotides HMPREF1058_RS01280 and HMPREF1058_RS01275 are separated by 2 nucleotides
HMPREF1058_RS01290: HMPREF1058_RS01290 - DUF1622 domain-containing protein, at 164,421 to 164,762
_RS01290
HMPREF1058_RS01285: HMPREF1058_RS01285 - alpha-ribazole phosphatase, at 164,814 to 165,344
_RS01285
HMPREF1058_RS01280: HMPREF1058_RS01280 - adenosylcobinamide-GDP ribazoletransferase, at 165,338 to 166,087
_RS01280
HMPREF1058_RS01275: HMPREF1058_RS01275 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 166,090 to 167,127
_RS01275
Position (kb) 165
166
167 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 164.389 kb on + strand at 164.393 kb on + strand at 164.393 kb on + strand at 164.394 kb on - strand at 164.449 kb on - strand at 164.495 kb on + strand, within HMPREF1058_RS01290 at 164.495 kb on + strand, within HMPREF1058_RS01290 at 164.496 kb on - strand, within HMPREF1058_RS01290 at 164.600 kb on + strand, within HMPREF1058_RS01290 at 164.601 kb on - strand, within HMPREF1058_RS01290 at 164.608 kb on - strand, within HMPREF1058_RS01290 at 164.796 kb on - strand at 164.810 kb on + strand at 164.810 kb on + strand at 164.810 kb on + strand at 164.810 kb on + strand at 164.810 kb on + strand at 164.827 kb on - strand at 164.846 kb on - strand at 164.894 kb on - strand, within HMPREF1058_RS01285 at 165.194 kb on + strand, within HMPREF1058_RS01285 at 165.214 kb on - strand, within HMPREF1058_RS01285 at 165.334 kb on + strand at 165.336 kb on + strand at 165.337 kb on - strand at 165.337 kb on - strand at 165.355 kb on - strand at 165.425 kb on - strand, within HMPREF1058_RS01280 at 165.527 kb on - strand at 165.582 kb on + strand, within HMPREF1058_RS01280 at 165.582 kb on + strand, within HMPREF1058_RS01280 at 165.583 kb on - strand, within HMPREF1058_RS01280 at 165.720 kb on - strand, within HMPREF1058_RS01280 at 165.721 kb on + strand, within HMPREF1058_RS01280 at 165.742 kb on - strand, within HMPREF1058_RS01280 at 165.750 kb on - strand, within HMPREF1058_RS01280 at 165.765 kb on + strand, within HMPREF1058_RS01280 at 165.765 kb on + strand, within HMPREF1058_RS01280 at 165.878 kb on + strand, within HMPREF1058_RS01280 at 165.912 kb on - strand, within HMPREF1058_RS01280 at 165.961 kb on + strand, within HMPREF1058_RS01280 at 165.961 kb on + strand, within HMPREF1058_RS01280 at 166.014 kb on + strand at 166.147 kb on + strand at 166.246 kb on + strand, within HMPREF1058_RS01275 at 166.422 kb on - strand, within HMPREF1058_RS01275 at 166.444 kb on - strand, within HMPREF1058_RS01275 at 166.444 kb on - strand, within HMPREF1058_RS01275 at 166.500 kb on - strand, within HMPREF1058_RS01275 at 166.500 kb on - strand, within HMPREF1058_RS01275 at 166.500 kb on - strand, within HMPREF1058_RS01275 at 166.544 kb on - strand, within HMPREF1058_RS01275 at 166.750 kb on + strand, within HMPREF1058_RS01275 at 166.751 kb on - strand, within HMPREF1058_RS01275 at 166.756 kb on - strand, within HMPREF1058_RS01275 at 166.779 kb on - strand, within HMPREF1058_RS01275 at 166.813 kb on + strand, within HMPREF1058_RS01275 at 166.813 kb on + strand, within HMPREF1058_RS01275 at 166.821 kb on + strand, within HMPREF1058_RS01275 at 166.927 kb on + strand, within HMPREF1058_RS01275 at 166.928 kb on - strand at 166.930 kb on + strand, within HMPREF1058_RS01275 at 166.930 kb on + strand, within HMPREF1058_RS01275 at 166.933 kb on - strand, within HMPREF1058_RS01275 at 166.954 kb on + strand, within HMPREF1058_RS01275 at 167.075 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) remove 164,389 + -0.4 164,393 + +0.3 164,393 + +1.6 164,394 - +0.5 164,449 - +0.1 164,495 + HMPREF1058_RS01290 0.22 -0.2 164,495 + HMPREF1058_RS01290 0.22 +1.2 164,496 - HMPREF1058_RS01290 0.22 +3.4 164,600 + HMPREF1058_RS01290 0.52 +0.8 164,601 - HMPREF1058_RS01290 0.53 -0.8 164,608 - HMPREF1058_RS01290 0.55 +0.0 164,796 - +4.1 164,810 + +0.8 164,810 + +0.9 164,810 + +0.1 164,810 + -1.1 164,810 + -0.3 164,827 - +0.9 164,846 - -2.7 164,894 - HMPREF1058_RS01285 0.15 -0.7 165,194 + HMPREF1058_RS01285 0.72 -0.3 165,214 - HMPREF1058_RS01285 0.75 -0.4 165,334 + -1.2 165,336 + -0.6 165,337 - -2.3 165,337 - -1.8 165,355 - -0.9 165,425 - HMPREF1058_RS01280 0.12 -1.1 165,527 - +1.0 165,582 + HMPREF1058_RS01280 0.33 +1.0 165,582 + HMPREF1058_RS01280 0.33 -1.9 165,583 - HMPREF1058_RS01280 0.33 -1.0 165,720 - HMPREF1058_RS01280 0.51 -3.5 165,721 + HMPREF1058_RS01280 0.51 -3.2 165,742 - HMPREF1058_RS01280 0.54 -2.2 165,750 - HMPREF1058_RS01280 0.55 -3.2 165,765 + HMPREF1058_RS01280 0.57 -0.2 165,765 + HMPREF1058_RS01280 0.57 -1.3 165,878 + HMPREF1058_RS01280 0.72 -0.9 165,912 - HMPREF1058_RS01280 0.77 -1.1 165,961 + HMPREF1058_RS01280 0.83 +0.1 165,961 + HMPREF1058_RS01280 0.83 +0.0 166,014 + -0.7 166,147 + -1.4 166,246 + HMPREF1058_RS01275 0.15 -1.2 166,422 - HMPREF1058_RS01275 0.32 -3.9 166,444 - HMPREF1058_RS01275 0.34 -2.6 166,444 - HMPREF1058_RS01275 0.34 -2.8 166,500 - HMPREF1058_RS01275 0.39 -3.5 166,500 - HMPREF1058_RS01275 0.39 +0.7 166,500 - HMPREF1058_RS01275 0.39 -3.2 166,544 - HMPREF1058_RS01275 0.44 -2.1 166,750 + HMPREF1058_RS01275 0.64 -2.0 166,751 - HMPREF1058_RS01275 0.64 -2.1 166,756 - HMPREF1058_RS01275 0.64 -2.1 166,779 - HMPREF1058_RS01275 0.66 -0.2 166,813 + HMPREF1058_RS01275 0.70 +1.0 166,813 + HMPREF1058_RS01275 0.70 +0.3 166,821 + HMPREF1058_RS01275 0.70 -1.8 166,927 + HMPREF1058_RS01275 0.81 -4.3 166,928 - +0.0 166,930 + HMPREF1058_RS01275 0.81 -0.2 166,930 + HMPREF1058_RS01275 0.81 -1.2 166,933 - HMPREF1058_RS01275 0.81 -1.4 166,954 + HMPREF1058_RS01275 0.83 +0.0 167,075 - +1.3
Or see this region's nucleotide sequence