Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01275 and HMPREF1058_RS01270 are separated by 8 nucleotides HMPREF1058_RS01270 and HMPREF1058_RS01265 are separated by 4 nucleotides HMPREF1058_RS01265 and HMPREF1058_RS01260 are separated by 15 nucleotides
HMPREF1058_RS01275: HMPREF1058_RS01275 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 166,090 to 167,127
_RS01275
HMPREF1058_RS01270: HMPREF1058_RS01270 - bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase, at 167,136 to 167,645
_RS01270
HMPREF1058_RS01265: HMPREF1058_RS01265 - FHA domain-containing protein, at 167,650 to 168,174
_RS01265
HMPREF1058_RS01260: HMPREF1058_RS01260 - SPOR domain-containing protein, at 168,190 to 169,320
_RS01260
Position (kb) 167
168 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 166.147 kb on + strand at 166.246 kb on + strand, within HMPREF1058_RS01275 at 166.422 kb on - strand, within HMPREF1058_RS01275 at 166.444 kb on - strand, within HMPREF1058_RS01275 at 166.444 kb on - strand, within HMPREF1058_RS01275 at 166.500 kb on - strand, within HMPREF1058_RS01275 at 166.500 kb on - strand, within HMPREF1058_RS01275 at 166.500 kb on - strand, within HMPREF1058_RS01275 at 166.544 kb on - strand, within HMPREF1058_RS01275 at 166.750 kb on + strand, within HMPREF1058_RS01275 at 166.751 kb on - strand, within HMPREF1058_RS01275 at 166.756 kb on - strand, within HMPREF1058_RS01275 at 166.779 kb on - strand, within HMPREF1058_RS01275 at 166.813 kb on + strand, within HMPREF1058_RS01275 at 166.813 kb on + strand, within HMPREF1058_RS01275 at 166.821 kb on + strand, within HMPREF1058_RS01275 at 166.927 kb on + strand, within HMPREF1058_RS01275 at 166.928 kb on - strand at 166.930 kb on + strand, within HMPREF1058_RS01275 at 166.930 kb on + strand, within HMPREF1058_RS01275 at 166.933 kb on - strand, within HMPREF1058_RS01275 at 166.954 kb on + strand, within HMPREF1058_RS01275 at 167.075 kb on - strand at 167.131 kb on - strand at 167.173 kb on + strand at 167.174 kb on - strand at 167.175 kb on + strand at 167.196 kb on + strand, within HMPREF1058_RS01270 at 167.196 kb on + strand, within HMPREF1058_RS01270 at 167.200 kb on + strand, within HMPREF1058_RS01270 at 167.271 kb on + strand, within HMPREF1058_RS01270 at 167.272 kb on - strand, within HMPREF1058_RS01270 at 167.356 kb on - strand, within HMPREF1058_RS01270 at 167.387 kb on + strand, within HMPREF1058_RS01270 at 167.388 kb on - strand, within HMPREF1058_RS01270 at 167.394 kb on + strand, within HMPREF1058_RS01270 at 167.418 kb on + strand, within HMPREF1058_RS01270 at 167.418 kb on + strand, within HMPREF1058_RS01270 at 167.419 kb on - strand, within HMPREF1058_RS01270 at 167.419 kb on - strand, within HMPREF1058_RS01270 at 167.464 kb on - strand, within HMPREF1058_RS01270 at 167.464 kb on - strand, within HMPREF1058_RS01270 at 167.543 kb on + strand, within HMPREF1058_RS01270 at 167.544 kb on - strand, within HMPREF1058_RS01270 at 167.548 kb on - strand, within HMPREF1058_RS01270 at 167.552 kb on - strand, within HMPREF1058_RS01270 at 167.634 kb on - strand at 167.651 kb on + strand at 167.790 kb on + strand at 167.793 kb on - strand, within HMPREF1058_RS01265 at 167.832 kb on + strand, within HMPREF1058_RS01265 at 167.938 kb on + strand, within HMPREF1058_RS01265 at 167.939 kb on - strand, within HMPREF1058_RS01265 at 167.939 kb on - strand, within HMPREF1058_RS01265 at 167.948 kb on + strand, within HMPREF1058_RS01265 at 168.114 kb on + strand, within HMPREF1058_RS01265 at 168.117 kb on - strand, within HMPREF1058_RS01265 at 168.137 kb on - strand at 168.137 kb on - strand at 168.139 kb on - strand at 168.139 kb on - strand at 168.141 kb on - strand at 168.192 kb on - strand at 168.270 kb on + strand at 168.326 kb on - strand, within HMPREF1058_RS01260 at 168.357 kb on + strand, within HMPREF1058_RS01260 at 168.408 kb on - strand, within HMPREF1058_RS01260 at 168.408 kb on - strand, within HMPREF1058_RS01260 at 168.408 kb on - strand, within HMPREF1058_RS01260 at 168.411 kb on - strand, within HMPREF1058_RS01260 at 168.411 kb on - strand, within HMPREF1058_RS01260 at 168.528 kb on + strand, within HMPREF1058_RS01260
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) remove 166,147 + -1.4 166,246 + HMPREF1058_RS01275 0.15 -1.2 166,422 - HMPREF1058_RS01275 0.32 -3.9 166,444 - HMPREF1058_RS01275 0.34 -2.6 166,444 - HMPREF1058_RS01275 0.34 -2.8 166,500 - HMPREF1058_RS01275 0.39 -3.5 166,500 - HMPREF1058_RS01275 0.39 +0.7 166,500 - HMPREF1058_RS01275 0.39 -3.2 166,544 - HMPREF1058_RS01275 0.44 -2.1 166,750 + HMPREF1058_RS01275 0.64 -2.0 166,751 - HMPREF1058_RS01275 0.64 -2.1 166,756 - HMPREF1058_RS01275 0.64 -2.1 166,779 - HMPREF1058_RS01275 0.66 -0.2 166,813 + HMPREF1058_RS01275 0.70 +1.0 166,813 + HMPREF1058_RS01275 0.70 +0.3 166,821 + HMPREF1058_RS01275 0.70 -1.8 166,927 + HMPREF1058_RS01275 0.81 -4.3 166,928 - +0.0 166,930 + HMPREF1058_RS01275 0.81 -0.2 166,930 + HMPREF1058_RS01275 0.81 -1.2 166,933 - HMPREF1058_RS01275 0.81 -1.4 166,954 + HMPREF1058_RS01275 0.83 +0.0 167,075 - +1.3 167,131 - -0.6 167,173 + -1.9 167,174 - -0.7 167,175 + -0.9 167,196 + HMPREF1058_RS01270 0.12 -2.9 167,196 + HMPREF1058_RS01270 0.12 -1.1 167,200 + HMPREF1058_RS01270 0.13 -1.9 167,271 + HMPREF1058_RS01270 0.26 -1.5 167,272 - HMPREF1058_RS01270 0.27 -1.1 167,356 - HMPREF1058_RS01270 0.43 -2.7 167,387 + HMPREF1058_RS01270 0.49 -1.5 167,388 - HMPREF1058_RS01270 0.49 -3.1 167,394 + HMPREF1058_RS01270 0.51 -2.0 167,418 + HMPREF1058_RS01270 0.55 -1.6 167,418 + HMPREF1058_RS01270 0.55 +0.3 167,419 - HMPREF1058_RS01270 0.55 -3.3 167,419 - HMPREF1058_RS01270 0.55 -2.4 167,464 - HMPREF1058_RS01270 0.64 -2.7 167,464 - HMPREF1058_RS01270 0.64 -1.3 167,543 + HMPREF1058_RS01270 0.80 +1.0 167,544 - HMPREF1058_RS01270 0.80 -1.7 167,548 - HMPREF1058_RS01270 0.81 -3.2 167,552 - HMPREF1058_RS01270 0.82 -0.2 167,634 - -1.5 167,651 + -1.4 167,790 + +0.6 167,793 - HMPREF1058_RS01265 0.27 +1.4 167,832 + HMPREF1058_RS01265 0.35 -0.2 167,938 + HMPREF1058_RS01265 0.55 +1.0 167,939 - HMPREF1058_RS01265 0.55 +0.9 167,939 - HMPREF1058_RS01265 0.55 -0.1 167,948 + HMPREF1058_RS01265 0.57 -0.9 168,114 + HMPREF1058_RS01265 0.88 +0.7 168,117 - HMPREF1058_RS01265 0.89 -0.9 168,137 - -0.2 168,137 - -0.7 168,139 - -0.5 168,139 - +1.4 168,141 - +3.9 168,192 - -0.2 168,270 + -0.4 168,326 - HMPREF1058_RS01260 0.12 -0.9 168,357 + HMPREF1058_RS01260 0.15 -1.0 168,408 - HMPREF1058_RS01260 0.19 +0.1 168,408 - HMPREF1058_RS01260 0.19 -1.8 168,408 - HMPREF1058_RS01260 0.19 -1.5 168,411 - HMPREF1058_RS01260 0.20 -0.0 168,411 - HMPREF1058_RS01260 0.20 +0.3 168,528 + HMPREF1058_RS01260 0.30 -1.6
Or see this region's nucleotide sequence