Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01260 and HMPREF1058_RS01255 are separated by 118 nucleotides HMPREF1058_RS01255 and HMPREF1058_RS01250 are separated by 23 nucleotides HMPREF1058_RS01250 and HMPREF1058_RS01245 are separated by 8 nucleotides
HMPREF1058_RS01260: HMPREF1058_RS01260 - SPOR domain-containing protein, at 168,190 to 169,320
_RS01260
HMPREF1058_RS01255: HMPREF1058_RS01255 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 169,439 to 170,752
_RS01255
HMPREF1058_RS01250: HMPREF1058_RS01250 - DUF4738 domain-containing protein, at 170,776 to 171,564
_RS01250
HMPREF1058_RS01245: HMPREF1058_RS01245 - hypothetical protein, at 171,573 to 171,890
_RS01245
Position (kb) 169
170
171 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 168.528 kb on + strand, within HMPREF1058_RS01260 at 168.709 kb on + strand, within HMPREF1058_RS01260 at 168.723 kb on + strand, within HMPREF1058_RS01260 at 168.723 kb on + strand, within HMPREF1058_RS01260 at 168.737 kb on + strand, within HMPREF1058_RS01260 at 168.738 kb on - strand, within HMPREF1058_RS01260 at 168.738 kb on - strand, within HMPREF1058_RS01260 at 168.738 kb on - strand, within HMPREF1058_RS01260 at 168.779 kb on - strand, within HMPREF1058_RS01260 at 168.904 kb on + strand, within HMPREF1058_RS01260 at 168.927 kb on + strand, within HMPREF1058_RS01260 at 168.928 kb on - strand, within HMPREF1058_RS01260 at 168.928 kb on - strand, within HMPREF1058_RS01260 at 168.928 kb on - strand, within HMPREF1058_RS01260 at 168.938 kb on - strand, within HMPREF1058_RS01260 at 168.980 kb on + strand, within HMPREF1058_RS01260 at 168.981 kb on - strand, within HMPREF1058_RS01260 at 168.981 kb on - strand, within HMPREF1058_RS01260 at 168.997 kb on - strand, within HMPREF1058_RS01260 at 169.003 kb on + strand, within HMPREF1058_RS01260 at 169.046 kb on - strand, within HMPREF1058_RS01260 at 169.078 kb on + strand, within HMPREF1058_RS01260 at 169.079 kb on - strand, within HMPREF1058_RS01260 at 169.151 kb on - strand, within HMPREF1058_RS01260 at 169.180 kb on - strand, within HMPREF1058_RS01260 at 169.180 kb on - strand, within HMPREF1058_RS01260 at 169.184 kb on - strand, within HMPREF1058_RS01260 at 169.243 kb on - strand at 169.300 kb on - strand at 169.340 kb on + strand at 169.515 kb on + strand at 169.530 kb on + strand at 169.568 kb on - strand at 169.574 kb on - strand, within HMPREF1058_RS01255 at 169.614 kb on + strand, within HMPREF1058_RS01255 at 169.615 kb on - strand, within HMPREF1058_RS01255 at 169.731 kb on - strand, within HMPREF1058_RS01255 at 169.763 kb on - strand, within HMPREF1058_RS01255 at 169.776 kb on - strand, within HMPREF1058_RS01255 at 169.915 kb on + strand, within HMPREF1058_RS01255 at 169.963 kb on - strand, within HMPREF1058_RS01255 at 170.070 kb on - strand, within HMPREF1058_RS01255 at 170.151 kb on + strand, within HMPREF1058_RS01255 at 170.152 kb on - strand, within HMPREF1058_RS01255 at 170.155 kb on + strand, within HMPREF1058_RS01255 at 170.155 kb on + strand, within HMPREF1058_RS01255 at 170.458 kb on - strand, within HMPREF1058_RS01255 at 170.502 kb on - strand, within HMPREF1058_RS01255 at 170.515 kb on + strand, within HMPREF1058_RS01255 at 170.566 kb on + strand, within HMPREF1058_RS01255 at 170.570 kb on + strand, within HMPREF1058_RS01255 at 170.570 kb on + strand, within HMPREF1058_RS01255 at 170.571 kb on - strand, within HMPREF1058_RS01255 at 170.571 kb on - strand, within HMPREF1058_RS01255 at 170.571 kb on - strand, within HMPREF1058_RS01255 at 170.636 kb on - strand at 170.697 kb on - strand at 170.755 kb on - strand at 170.779 kb on + strand at 170.779 kb on + strand at 170.780 kb on - strand at 170.780 kb on - strand at 170.893 kb on - strand, within HMPREF1058_RS01250 at 170.894 kb on + strand, within HMPREF1058_RS01250 at 170.894 kb on + strand, within HMPREF1058_RS01250 at 170.895 kb on - strand, within HMPREF1058_RS01250 at 171.010 kb on - strand, within HMPREF1058_RS01250 at 171.061 kb on - strand, within HMPREF1058_RS01250 at 171.095 kb on + strand, within HMPREF1058_RS01250 at 171.105 kb on + strand, within HMPREF1058_RS01250 at 171.106 kb on - strand, within HMPREF1058_RS01250 at 171.145 kb on - strand, within HMPREF1058_RS01250 at 171.163 kb on + strand, within HMPREF1058_RS01250 at 171.164 kb on - strand, within HMPREF1058_RS01250 at 171.164 kb on - strand, within HMPREF1058_RS01250 at 171.200 kb on - strand, within HMPREF1058_RS01250 at 171.223 kb on + strand, within HMPREF1058_RS01250 at 171.229 kb on + strand, within HMPREF1058_RS01250 at 171.229 kb on + strand, within HMPREF1058_RS01250 at 171.230 kb on - strand, within HMPREF1058_RS01250 at 171.299 kb on + strand, within HMPREF1058_RS01250 at 171.300 kb on - strand, within HMPREF1058_RS01250 at 171.302 kb on - strand, within HMPREF1058_RS01250 at 171.302 kb on - strand, within HMPREF1058_RS01250 at 171.304 kb on + strand, within HMPREF1058_RS01250 at 171.305 kb on - strand, within HMPREF1058_RS01250 at 171.312 kb on + strand, within HMPREF1058_RS01250 at 171.313 kb on - strand, within HMPREF1058_RS01250 at 171.317 kb on + strand, within HMPREF1058_RS01250 at 171.318 kb on - strand, within HMPREF1058_RS01250 at 171.332 kb on - strand, within HMPREF1058_RS01250 at 171.332 kb on - strand, within HMPREF1058_RS01250 at 171.353 kb on - strand, within HMPREF1058_RS01250 at 171.419 kb on + strand, within HMPREF1058_RS01250 at 171.505 kb on + strand at 171.505 kb on + strand at 171.508 kb on - strand at 171.573 kb on - strand at 171.600 kb on + strand at 171.601 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) remove 168,528 + HMPREF1058_RS01260 0.30 -1.6 168,709 + HMPREF1058_RS01260 0.46 -3.5 168,723 + HMPREF1058_RS01260 0.47 -1.2 168,723 + HMPREF1058_RS01260 0.47 -3.4 168,737 + HMPREF1058_RS01260 0.48 +0.6 168,738 - HMPREF1058_RS01260 0.48 +1.1 168,738 - HMPREF1058_RS01260 0.48 +0.2 168,738 - HMPREF1058_RS01260 0.48 -1.2 168,779 - HMPREF1058_RS01260 0.52 -0.4 168,904 + HMPREF1058_RS01260 0.63 -1.5 168,927 + HMPREF1058_RS01260 0.65 -0.3 168,928 - HMPREF1058_RS01260 0.65 -0.1 168,928 - HMPREF1058_RS01260 0.65 +0.0 168,928 - HMPREF1058_RS01260 0.65 +1.6 168,938 - HMPREF1058_RS01260 0.66 -0.5 168,980 + HMPREF1058_RS01260 0.70 -2.0 168,981 - HMPREF1058_RS01260 0.70 -3.1 168,981 - HMPREF1058_RS01260 0.70 -0.9 168,997 - HMPREF1058_RS01260 0.71 -1.0 169,003 + HMPREF1058_RS01260 0.72 +1.0 169,046 - HMPREF1058_RS01260 0.76 +0.0 169,078 + HMPREF1058_RS01260 0.79 -1.4 169,079 - HMPREF1058_RS01260 0.79 -0.4 169,151 - HMPREF1058_RS01260 0.85 +0.7 169,180 - HMPREF1058_RS01260 0.88 +0.3 169,180 - HMPREF1058_RS01260 0.88 +0.4 169,184 - HMPREF1058_RS01260 0.88 -1.5 169,243 - +0.0 169,300 - -1.5 169,340 + -1.6 169,515 + +1.1 169,530 + -0.7 169,568 - -0.2 169,574 - HMPREF1058_RS01255 0.10 +0.0 169,614 + HMPREF1058_RS01255 0.13 -1.5 169,615 - HMPREF1058_RS01255 0.13 +0.6 169,731 - HMPREF1058_RS01255 0.22 +0.6 169,763 - HMPREF1058_RS01255 0.25 -0.3 169,776 - HMPREF1058_RS01255 0.26 +0.8 169,915 + HMPREF1058_RS01255 0.36 -2.7 169,963 - HMPREF1058_RS01255 0.40 +0.2 170,070 - HMPREF1058_RS01255 0.48 -0.4 170,151 + HMPREF1058_RS01255 0.54 +1.1 170,152 - HMPREF1058_RS01255 0.54 +1.6 170,155 + HMPREF1058_RS01255 0.54 -2.1 170,155 + HMPREF1058_RS01255 0.54 -0.6 170,458 - HMPREF1058_RS01255 0.78 -0.3 170,502 - HMPREF1058_RS01255 0.81 +1.6 170,515 + HMPREF1058_RS01255 0.82 +0.8 170,566 + HMPREF1058_RS01255 0.86 +1.6 170,570 + HMPREF1058_RS01255 0.86 +1.0 170,570 + HMPREF1058_RS01255 0.86 +0.3 170,571 - HMPREF1058_RS01255 0.86 -0.2 170,571 - HMPREF1058_RS01255 0.86 +0.5 170,571 - HMPREF1058_RS01255 0.86 +0.9 170,636 - -1.3 170,697 - +2.8 170,755 - -2.6 170,779 + -1.2 170,779 + -2.5 170,780 - +0.6 170,780 - -1.1 170,893 - HMPREF1058_RS01250 0.15 +3.9 170,894 + HMPREF1058_RS01250 0.15 -0.0 170,894 + HMPREF1058_RS01250 0.15 +1.7 170,895 - HMPREF1058_RS01250 0.15 -0.2 171,010 - HMPREF1058_RS01250 0.30 -1.2 171,061 - HMPREF1058_RS01250 0.36 +0.5 171,095 + HMPREF1058_RS01250 0.40 -2.1 171,105 + HMPREF1058_RS01250 0.42 +0.3 171,106 - HMPREF1058_RS01250 0.42 +0.9 171,145 - HMPREF1058_RS01250 0.47 +1.4 171,163 + HMPREF1058_RS01250 0.49 +1.2 171,164 - HMPREF1058_RS01250 0.49 -0.8 171,164 - HMPREF1058_RS01250 0.49 -0.1 171,200 - HMPREF1058_RS01250 0.54 +0.6 171,223 + HMPREF1058_RS01250 0.57 -0.3 171,229 + HMPREF1058_RS01250 0.57 +0.6 171,229 + HMPREF1058_RS01250 0.57 -0.6 171,230 - HMPREF1058_RS01250 0.58 +0.7 171,299 + HMPREF1058_RS01250 0.66 +0.6 171,300 - HMPREF1058_RS01250 0.66 -0.2 171,302 - HMPREF1058_RS01250 0.67 -0.0 171,302 - HMPREF1058_RS01250 0.67 -0.3 171,304 + HMPREF1058_RS01250 0.67 +2.2 171,305 - HMPREF1058_RS01250 0.67 -0.1 171,312 + HMPREF1058_RS01250 0.68 -0.2 171,313 - HMPREF1058_RS01250 0.68 -0.8 171,317 + HMPREF1058_RS01250 0.69 +0.1 171,318 - HMPREF1058_RS01250 0.69 +0.4 171,332 - HMPREF1058_RS01250 0.70 -0.4 171,332 - HMPREF1058_RS01250 0.70 +0.4 171,353 - HMPREF1058_RS01250 0.73 +0.3 171,419 + HMPREF1058_RS01250 0.81 -1.7 171,505 + +0.1 171,505 + -0.3 171,508 - -2.4 171,573 - -0.1 171,600 + +0.3 171,601 - +0.7
Or see this region's nucleotide sequence