Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06405

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06403 and H281DRAFT_06404 overlap by 58 nucleotidesH281DRAFT_06404 and H281DRAFT_06405 overlap by 4 nucleotidesH281DRAFT_06405 and H281DRAFT_06406 are separated by 46 nucleotides H281DRAFT_06403: H281DRAFT_06403 - hypothetical protein, at 823 to 1,518 _06403 H281DRAFT_06404: H281DRAFT_06404 - Predicted acyltransferases, at 1,461 to 2,015 _06404 H281DRAFT_06405: H281DRAFT_06405 - beta-lactamase class A, at 2,012 to 2,884 _06405 H281DRAFT_06406: H281DRAFT_06406 - D-alanyl-D-alanine endopeptidase (penicillin-binding protein 7), at 2,931 to 4,691 _06406 Position (kb) 2 3Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1.083 kb on - strand, within H281DRAFT_06403at 1.091 kb on + strand, within H281DRAFT_06403at 1.091 kb on + strand, within H281DRAFT_06403at 1.091 kb on + strand, within H281DRAFT_06403at 1.092 kb on - strand, within H281DRAFT_06403at 1.092 kb on - strand, within H281DRAFT_06403at 1.092 kb on - strand, within H281DRAFT_06403at 1.095 kb on + strand, within H281DRAFT_06403at 1.095 kb on + strand, within H281DRAFT_06403at 1.095 kb on + strand, within H281DRAFT_06403at 1.095 kb on + strand, within H281DRAFT_06403at 1.095 kb on + strand, within H281DRAFT_06403at 1.095 kb on + strand, within H281DRAFT_06403at 1.096 kb on - strand, within H281DRAFT_06403at 1.096 kb on - strand, within H281DRAFT_06403at 1.096 kb on - strand, within H281DRAFT_06403at 1.177 kb on + strandat 1.177 kb on + strand, within H281DRAFT_06403at 1.178 kb on - strand, within H281DRAFT_06403at 1.178 kb on - strand, within H281DRAFT_06403at 1.250 kb on + strand, within H281DRAFT_06403at 1.250 kb on + strand, within H281DRAFT_06403at 1.250 kb on + strand, within H281DRAFT_06403at 1.250 kb on + strand, within H281DRAFT_06403at 1.251 kb on - strand, within H281DRAFT_06403at 1.251 kb on - strand, within H281DRAFT_06403at 1.388 kb on + strand, within H281DRAFT_06403at 1.389 kb on - strand, within H281DRAFT_06403at 1.389 kb on - strand, within H281DRAFT_06403at 1.421 kb on + strand, within H281DRAFT_06403at 1.555 kb on + strand, within H281DRAFT_06404at 1.555 kb on + strand, within H281DRAFT_06404at 1.555 kb on + strand, within H281DRAFT_06404at 1.555 kb on + strand, within H281DRAFT_06404at 1.555 kb on + strand, within H281DRAFT_06404at 1.555 kb on + strand, within H281DRAFT_06404at 1.555 kb on + strand, within H281DRAFT_06404at 1.556 kb on - strand, within H281DRAFT_06404at 1.556 kb on - strand, within H281DRAFT_06404at 1.751 kb on - strand, within H281DRAFT_06404at 1.817 kb on - strand, within H281DRAFT_06404at 1.850 kb on - strand, within H281DRAFT_06404at 1.894 kb on - strand, within H281DRAFT_06404at 1.894 kb on - strand, within H281DRAFT_06404at 1.894 kb on - strand, within H281DRAFT_06404at 1.977 kb on + strandat 1.978 kb on - strandat 2.103 kb on + strand, within H281DRAFT_06405at 2.103 kb on + strand, within H281DRAFT_06405at 2.104 kb on - strand, within H281DRAFT_06405at 2.154 kb on + strand, within H281DRAFT_06405at 2.598 kb on + strand, within H281DRAFT_06405at 2.598 kb on + strand, within H281DRAFT_06405at 2.648 kb on + strand, within H281DRAFT_06405at 3.371 kb on - strand, within H281DRAFT_06406at 3.389 kb on - strand, within H281DRAFT_06406at 3.728 kb on + strand, within H281DRAFT_06406at 3.736 kb on + strand, within H281DRAFT_06406at 3.737 kb on - strand, within H281DRAFT_06406at 3.772 kb on + strand, within H281DRAFT_06406at 3.772 kb on + strand, within H281DRAFT_06406at 3.773 kb on - strandat 3.828 kb on + strand, within H281DRAFT_06406at 3.829 kb on - strand, within H281DRAFT_06406

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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1,083 - H281DRAFT_06403 0.37 -0.4
1,091 + H281DRAFT_06403 0.39 +2.3
1,091 + H281DRAFT_06403 0.39 +0.3
1,091 + H281DRAFT_06403 0.39 +0.0
1,092 - H281DRAFT_06403 0.39 +0.9
1,092 - H281DRAFT_06403 0.39 +1.0
1,092 - H281DRAFT_06403 0.39 +0.3
1,095 + H281DRAFT_06403 0.39 +0.9
1,095 + H281DRAFT_06403 0.39 -0.5
1,095 + H281DRAFT_06403 0.39 +0.3
1,095 + H281DRAFT_06403 0.39 -0.9
1,095 + H281DRAFT_06403 0.39 +0.4
1,095 + H281DRAFT_06403 0.39 -0.2
1,096 - H281DRAFT_06403 0.39 +0.1
1,096 - H281DRAFT_06403 0.39 +0.0
1,096 - H281DRAFT_06403 0.39 -0.1
1,177 + +1.4
1,177 + H281DRAFT_06403 0.51 -0.2
1,178 - H281DRAFT_06403 0.51 +0.1
1,178 - H281DRAFT_06403 0.51 +0.0
1,250 + H281DRAFT_06403 0.61 -0.0
1,250 + H281DRAFT_06403 0.61 +0.3
1,250 + H281DRAFT_06403 0.61 -0.3
1,250 + H281DRAFT_06403 0.61 -0.4
1,251 - H281DRAFT_06403 0.61 +0.3
1,251 - H281DRAFT_06403 0.61 -0.2
1,388 + H281DRAFT_06403 0.81 +0.3
1,389 - H281DRAFT_06403 0.81 +0.0
1,389 - H281DRAFT_06403 0.81 +2.0
1,421 + H281DRAFT_06403 0.86 +1.7
1,555 + H281DRAFT_06404 0.17 +0.5
1,555 + H281DRAFT_06404 0.17 +0.0
1,555 + H281DRAFT_06404 0.17 +0.1
1,555 + H281DRAFT_06404 0.17 -0.1
1,555 + H281DRAFT_06404 0.17 +0.4
1,555 + H281DRAFT_06404 0.17 -1.1
1,555 + H281DRAFT_06404 0.17 -1.2
1,556 - H281DRAFT_06404 0.17 +0.7
1,556 - H281DRAFT_06404 0.17 +0.1
1,751 - H281DRAFT_06404 0.52 -0.7
1,817 - H281DRAFT_06404 0.64 -0.5
1,850 - H281DRAFT_06404 0.70 -0.1
1,894 - H281DRAFT_06404 0.78 +2.4
1,894 - H281DRAFT_06404 0.78 +1.4
1,894 - H281DRAFT_06404 0.78 -0.2
1,977 + -0.7
1,978 - -1.5
2,103 + H281DRAFT_06405 0.10 -0.0
2,103 + H281DRAFT_06405 0.10 -1.3
2,104 - H281DRAFT_06405 0.11 -0.6
2,154 + H281DRAFT_06405 0.16 -0.4
2,598 + H281DRAFT_06405 0.67 +0.6
2,598 + H281DRAFT_06405 0.67 -2.4
2,648 + H281DRAFT_06405 0.73 -0.3
3,371 - H281DRAFT_06406 0.25 -0.2
3,389 - H281DRAFT_06406 0.26 +0.6
3,728 + H281DRAFT_06406 0.45 -0.1
3,736 + H281DRAFT_06406 0.46 -0.3
3,737 - H281DRAFT_06406 0.46 -0.2
3,772 + H281DRAFT_06406 0.48 -0.6
3,772 + H281DRAFT_06406 0.48 -2.8
3,773 - -0.7
3,828 + H281DRAFT_06406 0.51 +0.6
3,829 - H281DRAFT_06406 0.51 +0.7

Or see this region's nucleotide sequence