Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05967

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05966 and H281DRAFT_05967 are separated by 68 nucleotidesH281DRAFT_05967 and H281DRAFT_05968 are separated by 291 nucleotides H281DRAFT_05966: H281DRAFT_05966 - transcriptional regulator, LysR family, at 107,733 to 108,746 _05966 H281DRAFT_05967: H281DRAFT_05967 - Cupredoxin-like domain-containing protein, at 108,815 to 109,231 _05967 H281DRAFT_05968: H281DRAFT_05968 - 40-residue YVTN family beta-propeller repeat-containing protein, at 109,523 to 110,584 _05968 Position (kb) 108 109 110Strain fitness (log2 ratio) -1 0 1at 108.563 kb on + strand, within H281DRAFT_05966at 108.855 kb on + strandat 108.856 kb on - strandat 108.885 kb on + strand, within H281DRAFT_05967at 109.399 kb on + strandat 109.399 kb on + strandat 109.846 kb on - strand, within H281DRAFT_05968at 109.868 kb on + strand, within H281DRAFT_05968at 110.096 kb on + strand, within H281DRAFT_05968at 110.225 kb on + strand, within H281DRAFT_05968at 110.226 kb on - strand, within H281DRAFT_05968at 110.226 kb on - strand, within H281DRAFT_05968at 110.226 kb on - strand, within H281DRAFT_05968

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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108,563 + H281DRAFT_05966 0.82 +0.4
108,855 + -0.4
108,856 - -0.0
108,885 + H281DRAFT_05967 0.17 -0.9
109,399 + -0.1
109,399 + +0.0
109,846 - H281DRAFT_05968 0.30 -1.0
109,868 + H281DRAFT_05968 0.32 -0.3
110,096 + H281DRAFT_05968 0.54 -0.1
110,225 + H281DRAFT_05968 0.66 -0.4
110,226 - H281DRAFT_05968 0.66 -0.4
110,226 - H281DRAFT_05968 0.66 +1.2
110,226 - H281DRAFT_05968 0.66 -1.3

Or see this region's nucleotide sequence