Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05965

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05964 and H281DRAFT_05965 are separated by 81 nucleotidesH281DRAFT_05965 and H281DRAFT_05966 are separated by 115 nucleotides H281DRAFT_05964: H281DRAFT_05964 - D-galactonate transporter, at 105,362 to 106,666 _05964 H281DRAFT_05965: H281DRAFT_05965 - Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase, at 106,748 to 107,617 _05965 H281DRAFT_05966: H281DRAFT_05966 - transcriptional regulator, LysR family, at 107,733 to 108,746 _05966 Position (kb) 106 107 108Strain fitness (log2 ratio) -2 -1 0 1at 106.047 kb on + strand, within H281DRAFT_05964at 106.245 kb on + strand, within H281DRAFT_05964at 106.472 kb on + strand, within H281DRAFT_05964at 106.472 kb on + strand, within H281DRAFT_05964at 106.532 kb on + strand, within H281DRAFT_05964at 106.563 kb on + strandat 106.788 kb on + strandat 106.788 kb on + strandat 106.818 kb on + strandat 107.101 kb on - strand, within H281DRAFT_05965at 107.122 kb on + strand, within H281DRAFT_05965at 107.123 kb on - strand, within H281DRAFT_05965at 107.256 kb on + strand, within H281DRAFT_05965at 107.282 kb on - strand, within H281DRAFT_05965at 107.350 kb on - strand, within H281DRAFT_05965at 107.350 kb on - strand, within H281DRAFT_05965at 107.401 kb on - strand, within H281DRAFT_05965at 107.698 kb on - strandat 107.719 kb on + strandat 107.776 kb on + strandat 107.777 kb on - strandat 108.563 kb on + strand, within H281DRAFT_05966

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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106,047 + H281DRAFT_05964 0.52 -0.2
106,245 + H281DRAFT_05964 0.68 +0.5
106,472 + H281DRAFT_05964 0.85 -1.8
106,472 + H281DRAFT_05964 0.85 -0.1
106,532 + H281DRAFT_05964 0.90 -0.2
106,563 + -0.7
106,788 + +0.4
106,788 + -0.6
106,818 + +0.8
107,101 - H281DRAFT_05965 0.41 +0.8
107,122 + H281DRAFT_05965 0.43 -0.0
107,123 - H281DRAFT_05965 0.43 -0.2
107,256 + H281DRAFT_05965 0.58 +0.1
107,282 - H281DRAFT_05965 0.61 -0.0
107,350 - H281DRAFT_05965 0.69 -0.0
107,350 - H281DRAFT_05965 0.69 +0.2
107,401 - H281DRAFT_05965 0.75 +0.1
107,698 - -0.5
107,719 + -0.4
107,776 + +0.0
107,777 - -0.2
108,563 + H281DRAFT_05966 0.82 +0.4

Or see this region's nucleotide sequence