Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04266

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04265 and H281DRAFT_04266 are separated by 187 nucleotidesH281DRAFT_04266 and H281DRAFT_04267 are separated by 122 nucleotidesH281DRAFT_04267 and H281DRAFT_04268 overlap by 4 nucleotides H281DRAFT_04265: H281DRAFT_04265 - dihydroorotase, at 383,053 to 384,123 _04265 H281DRAFT_04266: H281DRAFT_04266 - glutamine amidotransferase, at 384,311 to 385,246 _04266 H281DRAFT_04267: H281DRAFT_04267 - L-glutamate ABC transporter ATP-binding protein /L-aspartate ABC transporter ATP-binding protein, at 385,369 to 386,094 _04267 H281DRAFT_04268: H281DRAFT_04268 - L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein, at 386,091 to 386,768 _04268 Position (kb) 384 385 386Strain fitness (log2 ratio) -1 0 1at 384.276 kb on + strandat 384.276 kb on + strandat 384.301 kb on + strandat 384.302 kb on - strandat 384.674 kb on + strand, within H281DRAFT_04266at 384.675 kb on - strand, within H281DRAFT_04266at 384.800 kb on - strandat 384.887 kb on + strand, within H281DRAFT_04266at 384.959 kb on + strand, within H281DRAFT_04266at 385.071 kb on + strand, within H281DRAFT_04266at 385.071 kb on + strand, within H281DRAFT_04266at 385.288 kb on - strandat 386.048 kb on - strandat 386.086 kb on - strandat 386.086 kb on - strandat 386.086 kb on - strandat 386.175 kb on + strand, within H281DRAFT_04268at 386.175 kb on + strand, within H281DRAFT_04268

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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384,276 + +0.8
384,276 + +1.7
384,301 + +0.7
384,302 - +0.4
384,674 + H281DRAFT_04266 0.39 +0.6
384,675 - H281DRAFT_04266 0.39 +1.0
384,800 - +1.1
384,887 + H281DRAFT_04266 0.62 +1.1
384,959 + H281DRAFT_04266 0.69 -0.6
385,071 + H281DRAFT_04266 0.81 +0.3
385,071 + H281DRAFT_04266 0.81 +0.7
385,288 - +0.1
386,048 - +1.0
386,086 - +0.1
386,086 - +0.9
386,086 - -0.9
386,175 + H281DRAFT_04268 0.12 +1.0
386,175 + H281DRAFT_04268 0.12 +0.2

Or see this region's nucleotide sequence