Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02379

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02378 and H281DRAFT_02379 overlap by 1 nucleotidesH281DRAFT_02379 and H281DRAFT_02380 are separated by 516 nucleotides H281DRAFT_02378: H281DRAFT_02378 - amino acid/amide ABC transporter membrane protein 1, HAAT family, at 540,455 to 541,339 _02378 H281DRAFT_02379: H281DRAFT_02379 - amino acid/amide ABC transporter membrane protein 2, HAAT family, at 541,339 to 542,310 _02379 H281DRAFT_02380: H281DRAFT_02380 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 542,827 to 543,993 _02380 Position (kb) 541 542 543Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 540.363 kb on + strandat 540.446 kb on - strandat 540.641 kb on + strand, within H281DRAFT_02378at 540.642 kb on - strand, within H281DRAFT_02378at 540.642 kb on - strand, within H281DRAFT_02378at 540.656 kb on + strand, within H281DRAFT_02378at 540.755 kb on + strand, within H281DRAFT_02378at 540.811 kb on + strand, within H281DRAFT_02378at 540.811 kb on + strand, within H281DRAFT_02378at 540.811 kb on + strand, within H281DRAFT_02378at 540.811 kb on + strand, within H281DRAFT_02378at 540.812 kb on - strand, within H281DRAFT_02378at 540.812 kb on - strand, within H281DRAFT_02378at 540.816 kb on - strand, within H281DRAFT_02378at 540.816 kb on - strand, within H281DRAFT_02378at 540.816 kb on - strand, within H281DRAFT_02378at 540.836 kb on + strand, within H281DRAFT_02378at 540.897 kb on - strand, within H281DRAFT_02378at 541.055 kb on + strand, within H281DRAFT_02378at 541.055 kb on + strand, within H281DRAFT_02378at 541.056 kb on - strand, within H281DRAFT_02378at 541.352 kb on + strandat 541.352 kb on + strandat 541.357 kb on + strandat 541.358 kb on - strandat 541.406 kb on - strandat 541.406 kb on - strandat 541.474 kb on + strand, within H281DRAFT_02379at 541.475 kb on - strand, within H281DRAFT_02379at 541.526 kb on - strand, within H281DRAFT_02379at 541.526 kb on - strand, within H281DRAFT_02379at 541.537 kb on + strand, within H281DRAFT_02379at 541.651 kb on + strand, within H281DRAFT_02379at 541.652 kb on - strand, within H281DRAFT_02379at 541.652 kb on - strand, within H281DRAFT_02379at 541.690 kb on + strand, within H281DRAFT_02379at 541.690 kb on + strand, within H281DRAFT_02379at 541.691 kb on - strand, within H281DRAFT_02379at 541.798 kb on + strand, within H281DRAFT_02379at 541.820 kb on + strand, within H281DRAFT_02379at 541.821 kb on - strand, within H281DRAFT_02379at 541.922 kb on - strand, within H281DRAFT_02379at 541.926 kb on + strand, within H281DRAFT_02379at 541.927 kb on - strand, within H281DRAFT_02379at 542.021 kb on + strand, within H281DRAFT_02379at 542.022 kb on - strand, within H281DRAFT_02379at 542.235 kb on + strandat 542.236 kb on - strandat 542.368 kb on + strandat 542.369 kb on - strandat 542.369 kb on - strandat 542.369 kb on - strandat 542.396 kb on + strandat 542.396 kb on + strandat 542.401 kb on + strandat 542.401 kb on + strandat 542.402 kb on - strandat 542.466 kb on - strandat 542.472 kb on + strandat 542.473 kb on - strandat 542.473 kb on - strandat 542.563 kb on - strandat 542.630 kb on - strandat 542.669 kb on - strandat 542.669 kb on - strandat 542.680 kb on - strandat 542.752 kb on - strandat 542.816 kb on - strandat 543.022 kb on + strand, within H281DRAFT_02380at 543.022 kb on + strand, within H281DRAFT_02380at 543.023 kb on - strand, within H281DRAFT_02380at 543.023 kb on - strand, within H281DRAFT_02380at 543.023 kb on - strand, within H281DRAFT_02380at 543.098 kb on + strand, within H281DRAFT_02380at 543.099 kb on - strand, within H281DRAFT_02380at 543.146 kb on + strand, within H281DRAFT_02380at 543.147 kb on - strand, within H281DRAFT_02380

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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540,363 + -0.2
540,446 - -0.5
540,641 + H281DRAFT_02378 0.21 -0.3
540,642 - H281DRAFT_02378 0.21 -0.5
540,642 - H281DRAFT_02378 0.21 +0.3
540,656 + H281DRAFT_02378 0.23 -0.3
540,755 + H281DRAFT_02378 0.34 -0.2
540,811 + H281DRAFT_02378 0.40 -0.1
540,811 + H281DRAFT_02378 0.40 +1.6
540,811 + H281DRAFT_02378 0.40 -0.1
540,811 + H281DRAFT_02378 0.40 -0.9
540,812 - H281DRAFT_02378 0.40 -0.5
540,812 - H281DRAFT_02378 0.40 -0.5
540,816 - H281DRAFT_02378 0.41 -0.3
540,816 - H281DRAFT_02378 0.41 -0.3
540,816 - H281DRAFT_02378 0.41 -0.6
540,836 + H281DRAFT_02378 0.43 -0.6
540,897 - H281DRAFT_02378 0.50 +0.1
541,055 + H281DRAFT_02378 0.68 -1.7
541,055 + H281DRAFT_02378 0.68 -1.4
541,056 - H281DRAFT_02378 0.68 -3.2
541,352 + -0.8
541,352 + -1.0
541,357 + -0.6
541,358 - -0.7
541,406 - -1.4
541,406 - -3.6
541,474 + H281DRAFT_02379 0.14 -1.2
541,475 - H281DRAFT_02379 0.14 -0.2
541,526 - H281DRAFT_02379 0.19 -0.4
541,526 - H281DRAFT_02379 0.19 -0.1
541,537 + H281DRAFT_02379 0.20 -0.9
541,651 + H281DRAFT_02379 0.32 -1.5
541,652 - H281DRAFT_02379 0.32 -0.2
541,652 - H281DRAFT_02379 0.32 -0.7
541,690 + H281DRAFT_02379 0.36 +0.3
541,690 + H281DRAFT_02379 0.36 +0.6
541,691 - H281DRAFT_02379 0.36 -0.8
541,798 + H281DRAFT_02379 0.47 -0.8
541,820 + H281DRAFT_02379 0.49 -0.5
541,821 - H281DRAFT_02379 0.50 -1.2
541,922 - H281DRAFT_02379 0.60 -0.1
541,926 + H281DRAFT_02379 0.60 -0.7
541,927 - H281DRAFT_02379 0.60 -1.3
542,021 + H281DRAFT_02379 0.70 -0.3
542,022 - H281DRAFT_02379 0.70 +0.3
542,235 + -1.6
542,236 - -1.0
542,368 + +0.1
542,369 - -0.8
542,369 - -0.1
542,369 - +0.3
542,396 + +0.9
542,396 + +0.3
542,401 + -0.9
542,401 + -0.2
542,402 - -0.8
542,466 - -2.1
542,472 + -2.8
542,473 - -3.1
542,473 - -4.8
542,563 - -2.8
542,630 - -0.6
542,669 - -0.7
542,669 - +0.1
542,680 - -1.4
542,752 - -0.2
542,816 - -0.2
543,022 + H281DRAFT_02380 0.17 -1.8
543,022 + H281DRAFT_02380 0.17 +0.5
543,023 - H281DRAFT_02380 0.17 +0.7
543,023 - H281DRAFT_02380 0.17 +1.4
543,023 - H281DRAFT_02380 0.17 -0.4
543,098 + H281DRAFT_02380 0.23 -2.1
543,099 - H281DRAFT_02380 0.23 -1.3
543,146 + H281DRAFT_02380 0.27 -1.2
543,147 - H281DRAFT_02380 0.27 -3.7

Or see this region's nucleotide sequence