Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01999

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01997 and H281DRAFT_01998 are separated by 18 nucleotidesH281DRAFT_01998 and H281DRAFT_01999 overlap by 28 nucleotidesH281DRAFT_01999 and H281DRAFT_02000 are separated by 114 nucleotides H281DRAFT_01997: H281DRAFT_01997 - comF family protein, at 116,025 to 116,726 _01997 H281DRAFT_01998: H281DRAFT_01998 - tRNA (cytidine/uridine-2'-O-)-methyltransferase, at 116,745 to 117,215 _01998 H281DRAFT_01999: H281DRAFT_01999 - O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain, at 117,188 to 117,736 _01999 H281DRAFT_02000: H281DRAFT_02000 - glycerol-3-phosphate dehydrogenase (NAD(P)+), at 117,851 to 118,849 _02000 Position (kb) 117 118Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 116.427 kb on + strand, within H281DRAFT_01997at 116.428 kb on - strand, within H281DRAFT_01997at 116.429 kb on + strand, within H281DRAFT_01997at 116.429 kb on + strand, within H281DRAFT_01997at 116.605 kb on + strand, within H281DRAFT_01997at 116.605 kb on + strand, within H281DRAFT_01997at 116.606 kb on - strand, within H281DRAFT_01997at 116.606 kb on - strand, within H281DRAFT_01997at 116.606 kb on - strand, within H281DRAFT_01997at 116.606 kb on - strand, within H281DRAFT_01997at 116.623 kb on + strand, within H281DRAFT_01997at 116.623 kb on + strand, within H281DRAFT_01997at 116.623 kb on + strand, within H281DRAFT_01997at 116.623 kb on + strand, within H281DRAFT_01997at 116.624 kb on - strand, within H281DRAFT_01997at 116.624 kb on - strand, within H281DRAFT_01997at 116.624 kb on - strand, within H281DRAFT_01997at 116.624 kb on - strand, within H281DRAFT_01997at 116.725 kb on - strandat 116.731 kb on + strandat 116.732 kb on - strandat 116.744 kb on + strandat 116.744 kb on + strandat 116.744 kb on + strandat 116.744 kb on + strandat 116.744 kb on + strandat 116.745 kb on - strandat 116.745 kb on - strandat 116.745 kb on - strandat 116.745 kb on - strandat 116.806 kb on + strand, within H281DRAFT_01998at 116.895 kb on + strand, within H281DRAFT_01998at 116.896 kb on - strand, within H281DRAFT_01998at 116.905 kb on - strand, within H281DRAFT_01998at 116.945 kb on - strand, within H281DRAFT_01998at 117.508 kb on - strand, within H281DRAFT_01999at 117.508 kb on - strand, within H281DRAFT_01999at 117.649 kb on + strand, within H281DRAFT_01999at 117.649 kb on + strand, within H281DRAFT_01999at 117.649 kb on + strand, within H281DRAFT_01999at 117.650 kb on - strand, within H281DRAFT_01999at 117.725 kb on + strandat 117.725 kb on + strandat 117.725 kb on + strandat 117.725 kb on + strandat 117.725 kb on + strandat 117.725 kb on + strandat 117.726 kb on - strandat 117.726 kb on - strandat 117.726 kb on - strandat 117.726 kb on - strandat 117.726 kb on - strandat 117.726 kb on - strandat 117.726 kb on - strandat 117.726 kb on - strandat 117.726 kb on - strandat 117.726 kb on - strandat 117.727 kb on + strandat 117.728 kb on - strandat 117.728 kb on - strandat 117.736 kb on + strandat 117.736 kb on + strandat 117.736 kb on + strandat 117.737 kb on - strandat 117.737 kb on - strandat 117.805 kb on + strandat 117.805 kb on + strandat 117.806 kb on - strandat 117.852 kb on + strandat 118.295 kb on + strand, within H281DRAFT_02000at 118.296 kb on - strand, within H281DRAFT_02000at 118.319 kb on - strand, within H281DRAFT_02000at 118.320 kb on + strand, within H281DRAFT_02000at 118.320 kb on + strand, within H281DRAFT_02000at 118.321 kb on - strand, within H281DRAFT_02000at 118.321 kb on - strand, within H281DRAFT_02000at 118.321 kb on - strandat 118.543 kb on + strand, within H281DRAFT_02000at 118.544 kb on - strand, within H281DRAFT_02000at 118.710 kb on + strand, within H281DRAFT_02000

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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116,427 + H281DRAFT_01997 0.57 -3.4
116,428 - H281DRAFT_01997 0.57 +0.1
116,429 + H281DRAFT_01997 0.58 +0.6
116,429 + H281DRAFT_01997 0.58 -0.4
116,605 + H281DRAFT_01997 0.83 +0.5
116,605 + H281DRAFT_01997 0.83 +0.2
116,606 - H281DRAFT_01997 0.83 -0.5
116,606 - H281DRAFT_01997 0.83 +0.3
116,606 - H281DRAFT_01997 0.83 -0.9
116,606 - H281DRAFT_01997 0.83 -0.5
116,623 + H281DRAFT_01997 0.85 +0.9
116,623 + H281DRAFT_01997 0.85 -0.2
116,623 + H281DRAFT_01997 0.85 -0.2
116,623 + H281DRAFT_01997 0.85 +0.0
116,624 - H281DRAFT_01997 0.85 +0.6
116,624 - H281DRAFT_01997 0.85 -0.9
116,624 - H281DRAFT_01997 0.85 -0.2
116,624 - H281DRAFT_01997 0.85 +0.6
116,725 - +0.3
116,731 + -0.3
116,732 - +0.1
116,744 + -1.1
116,744 + +0.1
116,744 + +2.3
116,744 + -0.2
116,744 + -0.2
116,745 - -0.1
116,745 - +0.6
116,745 - +0.3
116,745 - -0.7
116,806 + H281DRAFT_01998 0.13 +0.3
116,895 + H281DRAFT_01998 0.32 -0.0
116,896 - H281DRAFT_01998 0.32 +0.2
116,905 - H281DRAFT_01998 0.34 +0.9
116,945 - H281DRAFT_01998 0.42 -0.6
117,508 - H281DRAFT_01999 0.58 +0.6
117,508 - H281DRAFT_01999 0.58 -0.1
117,649 + H281DRAFT_01999 0.84 +1.0
117,649 + H281DRAFT_01999 0.84 +0.3
117,649 + H281DRAFT_01999 0.84 -0.3
117,650 - H281DRAFT_01999 0.84 +0.5
117,725 + -0.6
117,725 + +0.2
117,725 + +0.9
117,725 + -0.5
117,725 + +0.1
117,725 + +1.0
117,726 - -0.4
117,726 - +0.2
117,726 - -0.2
117,726 - +0.0
117,726 - -0.6
117,726 - +0.2
117,726 - +0.3
117,726 - -0.6
117,726 - +0.1
117,726 - -0.1
117,727 + +0.0
117,728 - +0.1
117,728 - -0.5
117,736 + -0.4
117,736 + +0.9
117,736 + -0.1
117,737 - -1.0
117,737 - -0.4
117,805 + +0.9
117,805 + -1.3
117,806 - -0.6
117,852 + +0.7
118,295 + H281DRAFT_02000 0.44 -2.7
118,296 - H281DRAFT_02000 0.45 -3.5
118,319 - H281DRAFT_02000 0.47 -3.2
118,320 + H281DRAFT_02000 0.47 -2.4
118,320 + H281DRAFT_02000 0.47 -2.7
118,321 - H281DRAFT_02000 0.47 -1.7
118,321 - H281DRAFT_02000 0.47 -4.1
118,321 - +0.3
118,543 + H281DRAFT_02000 0.69 -1.3
118,544 - H281DRAFT_02000 0.69 -4.0
118,710 + H281DRAFT_02000 0.86 -3.0

Or see this region's nucleotide sequence