Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01173 and H281DRAFT_01174 are separated by 388 nucleotides H281DRAFT_01174 and H281DRAFT_01175 are separated by 182 nucleotides H281DRAFT_01175 and H281DRAFT_01176 are separated by 163 nucleotides
H281DRAFT_01173: H281DRAFT_01173 - Outer membrane protein (porin), at 6,621 to 7,811
_01173
H281DRAFT_01174: H281DRAFT_01174 - Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase), at 8,200 to 9,261
_01174
H281DRAFT_01175: H281DRAFT_01175 - hypothetical protein, at 9,444 to 9,623
_01175
H281DRAFT_01176: H281DRAFT_01176 - fatty-acyl-CoA synthase, at 9,787 to 11,442
_01176
Position (kb) 8
9
10 Strain fitness (log2 ratio) -1
0
1
2 at 7.204 kb on + strand, within H281DRAFT_01173 at 7.222 kb on + strand, within H281DRAFT_01173 at 7.709 kb on - strand at 7.738 kb on - strand at 8.120 kb on + strand at 8.150 kb on - strand at 8.823 kb on - strand, within H281DRAFT_01174 at 8.866 kb on + strand, within H281DRAFT_01174 at 8.866 kb on + strand, within H281DRAFT_01174 at 8.977 kb on - strand, within H281DRAFT_01174 at 8.977 kb on - strand, within H281DRAFT_01174 at 9.113 kb on + strand, within H281DRAFT_01174 at 9.114 kb on - strand, within H281DRAFT_01174 at 9.402 kb on - strand at 9.436 kb on - strand at 9.436 kb on - strand at 9.850 kb on + strand at 10.005 kb on + strand, within H281DRAFT_01176 at 10.028 kb on - strand, within H281DRAFT_01176 at 10.028 kb on - strand, within H281DRAFT_01176 at 10.030 kb on + strand, within H281DRAFT_01176 at 10.100 kb on - strand, within H281DRAFT_01176
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 7,204 + H281DRAFT_01173 0.49 -1.1 7,222 + H281DRAFT_01173 0.50 +0.2 7,709 - +0.0 7,738 - -0.5 8,120 + +0.5 8,150 - -0.4 8,823 - H281DRAFT_01174 0.59 +0.2 8,866 + H281DRAFT_01174 0.63 +0.2 8,866 + H281DRAFT_01174 0.63 +1.3 8,977 - H281DRAFT_01174 0.73 -0.1 8,977 - H281DRAFT_01174 0.73 +0.3 9,113 + H281DRAFT_01174 0.86 +1.7 9,114 - H281DRAFT_01174 0.86 +0.5 9,402 - -0.3 9,436 - -0.6 9,436 - -1.0 9,850 + -0.0 10,005 + H281DRAFT_01176 0.13 -0.1 10,028 - H281DRAFT_01176 0.15 -0.1 10,028 - H281DRAFT_01176 0.15 +0.7 10,030 + H281DRAFT_01176 0.15 +2.4 10,100 - H281DRAFT_01176 0.19 +0.6
Or see this region's nucleotide sequence