Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01169

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01168 and H281DRAFT_01169 are separated by 51 nucleotidesH281DRAFT_01169 and H281DRAFT_01170 overlap by 4 nucleotides H281DRAFT_01168: H281DRAFT_01168 - electron transfer flavoprotein beta subunit, at 3 to 653 _01168 H281DRAFT_01169: H281DRAFT_01169 - Crotonobetainyl-CoA:carnitine CoA-transferase CaiB, at 705 to 1,907 _01169 H281DRAFT_01170: H281DRAFT_01170 - Alkyl sulfatase BDS1, metallo-beta-lactamase superfamily, at 1,904 to 3,889 _01170 Position (kb) 0 1 2Strain fitness (log2 ratio) -1 0 1at 0.674 kb on + strandat 1.326 kb on + strand, within H281DRAFT_01169at 1.498 kb on + strand, within H281DRAFT_01169at 1.552 kb on + strand, within H281DRAFT_01169at 1.556 kb on + strand, within H281DRAFT_01169at 1.588 kb on + strand, within H281DRAFT_01169at 1.738 kb on + strand, within H281DRAFT_01169at 2.638 kb on + strand, within H281DRAFT_01170at 2.641 kb on - strand, within H281DRAFT_01170at 2.641 kb on - strand, within H281DRAFT_01170at 2.641 kb on - strand, within H281DRAFT_01170at 2.641 kb on - strand, within H281DRAFT_01170

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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674 + +0.2
1,326 + H281DRAFT_01169 0.52 -0.3
1,498 + H281DRAFT_01169 0.66 +0.1
1,552 + H281DRAFT_01169 0.70 -0.1
1,556 + H281DRAFT_01169 0.71 +1.1
1,588 + H281DRAFT_01169 0.73 -0.1
1,738 + H281DRAFT_01169 0.86 -1.7
2,638 + H281DRAFT_01170 0.37 -0.4
2,641 - H281DRAFT_01170 0.37 +0.3
2,641 - H281DRAFT_01170 0.37 +0.1
2,641 - H281DRAFT_01170 0.37 +0.2
2,641 - H281DRAFT_01170 0.37 +0.2

Or see this region's nucleotide sequence