Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1772

Experiment: 1-ethyl-3-methylimidazolium chloride 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_1770 and Ga0059261_1771 are separated by 2 nucleotidesGa0059261_1771 and Ga0059261_1772 are separated by 139 nucleotidesGa0059261_1772 and Ga0059261_1773 are separated by 191 nucleotides Ga0059261_1770: Ga0059261_1770 - hypothetical protein, at 1,876,396 to 1,877,022 _1770 Ga0059261_1771: Ga0059261_1771 - hypothetical protein, at 1,877,025 to 1,877,546 _1771 Ga0059261_1772: Ga0059261_1772 - MobA/MobL family, at 1,877,686 to 1,879,497 _1772 Ga0059261_1773: Ga0059261_1773 - ParB-like nuclease domain, at 1,879,689 to 1,880,726 _1773 Position (kb) 1877 1878 1879 1880Strain fitness (log2 ratio) -1 0 1at 1877.687 kb on + strandat 1877.814 kb on + strandat 1877.815 kb on - strandat 1877.922 kb on - strand, within Ga0059261_1772at 1877.922 kb on - strand, within Ga0059261_1772at 1877.922 kb on - strand, within Ga0059261_1772at 1878.928 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 5 mM
remove
1,877,687 + +0.6
1,877,814 + +0.1
1,877,815 - -0.7
1,877,922 - Ga0059261_1772 0.13 +0.3
1,877,922 - Ga0059261_1772 0.13 +1.7
1,877,922 - Ga0059261_1772 0.13 +0.5
1,878,928 - +1.2

Or see this region's nucleotide sequence