Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS25250

Experiment: R2A with Paraquat dichloride 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.003 mg/ml
6,143,925	-		CA265_RS25240	0.23	-0.9
6,143,925	-		CA265_RS25240	0.23	+0.0
6,143,926	+		CA265_RS25240	0.23	+0.0
6,143,927	-		CA265_RS25240	0.24	-1.1
6,143,932	-		CA265_RS25240	0.25	-0.8
6,143,963	-		CA265_RS25240	0.32	-0.9
6,144,016	+		CA265_RS25240	0.45	+0.2
6,144,076	+		CA265_RS25240	0.60	+0.3
6,144,172	-		CA265_RS25240	0.84	+0.5
6,144,236	+				-0.8
6,144,314	-				-0.6
6,144,318	+				-0.6
6,144,324	-				-0.6
6,144,392	+		CA265_RS25245	0.16	-1.3
6,144,407	+		CA265_RS25245	0.19	-0.4
6,144,408	-		CA265_RS25245	0.19	-0.7
6,144,429	+		CA265_RS25245	0.23	-1.0
6,144,430	-		CA265_RS25245	0.23	-0.6
6,144,430	-		CA265_RS25245	0.23	-1.8
6,144,451	+		CA265_RS25245	0.26	+0.1
6,144,452	-		CA265_RS25245	0.27	-0.4
6,144,461	-		CA265_RS25245	0.28	-2.1
6,144,461	-		CA265_RS25245	0.28	-0.6
6,144,515	+		CA265_RS25245	0.38	-1.1
6,144,516	-		CA265_RS25245	0.38	-0.1
6,144,529	-		CA265_RS25245	0.40	-0.1
6,144,586	-		CA265_RS25245	0.50	-0.9
6,144,607	+		CA265_RS25245	0.54	+0.1
6,144,749	-		CA265_RS25245	0.79	-1.6
6,144,753	+		CA265_RS25245	0.80	+0.1
6,144,754	-		CA265_RS25245	0.80	-2.6
6,144,759	+		CA265_RS25245	0.81	-0.6
6,144,762	+		CA265_RS25245	0.82	-0.7
6,144,762	+		CA265_RS25245	0.82	-0.1
6,144,763	-		CA265_RS25245	0.82	+0.0
6,144,763	-		CA265_RS25245	0.82	+0.1
6,144,826	-				-0.6
6,144,826	-				-2.1
6,144,829	-				-0.0
6,144,829	-				+0.1
6,144,869	-				-0.3
6,144,933	-				-0.6
6,145,065	+		CA265_RS25250	0.20	-0.8
6,145,101	+		CA265_RS25250	0.24	+1.4
6,145,102	-		CA265_RS25250	0.24	-0.1
6,145,198	-		CA265_RS25250	0.35	+0.4
6,145,232	-		CA265_RS25250	0.39	-1.2
6,145,354	-		CA265_RS25250	0.53	-0.7
6,145,391	+		CA265_RS25250	0.57	-1.3
6,145,391	+		CA265_RS25250	0.57	+0.6
6,145,392	-		CA265_RS25250	0.57	-1.7
6,145,424	+		CA265_RS25250	0.60	-1.1
6,145,428	+		CA265_RS25250	0.61	-1.3
6,145,429	-		CA265_RS25250	0.61	-0.8
6,145,429	-		CA265_RS25250	0.61	-0.5
6,145,448	+		CA265_RS25250	0.63	-1.1
6,145,448	+		CA265_RS25250	0.63	-1.6
6,145,474	+		CA265_RS25250	0.66	-1.7
6,145,475	-		CA265_RS25250	0.66	-0.8
6,145,572	+		CA265_RS25250	0.77	-1.9
6,145,603	+		CA265_RS25250	0.81	-1.9
6,145,646	+		CA265_RS25250	0.86	-2.0
6,145,647	-		CA265_RS25250	0.86	-1.0
6,145,654	+		CA265_RS25250	0.86	+1.4
6,145,654	+		CA265_RS25250	0.86	-1.5
6,145,655	-		CA265_RS25250	0.87	-0.0
6,145,655	-		CA265_RS25250	0.87	-1.0
6,145,718	+				-1.1
6,145,739	-				+0.6
6,145,753	+				-0.7
6,145,790	+				-0.3
6,145,814	-				-0.9
6,145,814	-				-0.3
6,145,859	-		CA265_RS25255	0.16	-1.0
6,145,859	-		CA265_RS25255	0.16	-0.3
6,145,889	+		CA265_RS25255	0.23	-0.3
6,145,919	+		CA265_RS25255	0.29	-0.4
6,145,931	-		CA265_RS25255	0.32	-0.0
6,145,969	+		CA265_RS25255	0.41	-0.6
6,145,981	-		CA265_RS25255	0.44	-0.3
6,146,019	-		CA265_RS25255	0.52	-0.1
6,146,019	-		CA265_RS25255	0.52	+0.4
6,146,019	-		CA265_RS25255	0.52	+0.1
6,146,022	-		CA265_RS25255	0.53	-0.3
6,146,033	-		CA265_RS25255	0.56	-1.0
6,146,069	-		CA265_RS25255	0.64	-1.1
6,146,069	-		CA265_RS25255	0.64	+2.0
6,146,112	+		CA265_RS25255	0.74	-0.3
6,146,113	-		CA265_RS25255	0.74	-1.0
6,146,113	-		CA265_RS25255	0.74	-0.7
6,146,113	-		CA265_RS25255	0.74	+0.3
6,146,115	-		CA265_RS25255	0.74	-0.6
6,146,115	-		CA265_RS25255	0.74	-1.6
6,146,131	-		CA265_RS25255	0.78	-1.4
6,146,133	-		CA265_RS25255	0.79	+0.6
6,146,133	-		CA265_RS25255	0.79	-0.7
6,146,133	-		CA265_RS25255	0.79	-1.1
6,146,141	-		CA265_RS25255	0.80	+0.3
6,146,167	+		CA265_RS25255	0.86	+0.0
6,146,168	-		CA265_RS25255	0.87	-0.4
6,146,203	+				-0.8
6,146,321	+		CA265_RS25260	0.36	-0.1
6,146,341	-		CA265_RS25260	0.42	-1.0
6,146,362	+		CA265_RS25260	0.49	+0.3
6,146,363	-		CA265_RS25260	0.49	-0.2
6,146,407	-		CA265_RS25260	0.63	-0.8
6,146,491	+		CA265_RS25260	0.89	+1.5
6,146,505	-				-0.5
6,146,506	+				+0.4
6,146,506	+				-0.2
6,146,528	+				-0.4
6,146,528	+				+1.1
6,146,530	+				+1.4
6,146,530	+				+1.2
6,146,535	-				+0.5
6,146,567	+				+1.1
6,146,624	-				+0.2
6,146,624	-				+1.5
6,146,624	-				-1.1
6,146,627	+				+1.1