Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS25240

Experiment: R2A with Paraquat dichloride 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.003 mg/ml
6,142,873	-		CA265_RS25235	0.44	-1.5
6,142,944	-		CA265_RS25235	0.49	-2.5
6,142,946	-		CA265_RS25235	0.49	-1.5
6,143,016	-		CA265_RS25235	0.53	-1.5
6,143,016	-		CA265_RS25235	0.53	-1.7
6,143,031	-		CA265_RS25235	0.54	-2.1
6,143,138	-		CA265_RS25235	0.61	-1.8
6,143,213	-		CA265_RS25235	0.66	-0.9
6,143,237	-		CA265_RS25235	0.68	-2.6
6,143,237	-		CA265_RS25235	0.68	-1.4
6,143,237	-		CA265_RS25235	0.68	-2.4
6,143,237	-		CA265_RS25235	0.68	-2.6
6,143,261	-		CA265_RS25235	0.70	-2.2
6,143,312	-				+1.4
6,143,335	-		CA265_RS25235	0.74	+2.4
6,143,402	+		CA265_RS25235	0.79	-0.0
6,143,405	-		CA265_RS25235	0.79	-1.4
6,143,500	-		CA265_RS25235	0.85	-2.5
6,143,500	-		CA265_RS25235	0.85	-0.1
6,143,504	-		CA265_RS25235	0.86	-0.5
6,143,581	+				+0.6
6,143,581	+				+0.9
6,143,587	-				-2.7
6,143,606	-				-2.4
6,143,612	+				-0.4
6,143,636	-				-2.2
6,143,685	-				-0.1
6,143,696	-				-1.1
6,143,806	-				+0.2
6,143,813	-				-2.4
6,143,874	+		CA265_RS25240	0.11	-0.4
6,143,874	+		CA265_RS25240	0.11	-0.0
6,143,876	+		CA265_RS25240	0.11	-0.8
6,143,885	-		CA265_RS25240	0.13	-1.3
6,143,925	-		CA265_RS25240	0.23	-0.9
6,143,925	-		CA265_RS25240	0.23	+0.0
6,143,926	+		CA265_RS25240	0.23	+0.0
6,143,927	-		CA265_RS25240	0.24	-1.1
6,143,932	-		CA265_RS25240	0.25	-0.8
6,143,963	-		CA265_RS25240	0.32	-0.9
6,144,016	+		CA265_RS25240	0.45	+0.2
6,144,076	+		CA265_RS25240	0.60	+0.3
6,144,172	-		CA265_RS25240	0.84	+0.5
6,144,236	+				-0.8
6,144,314	-				-0.6
6,144,318	+				-0.6
6,144,324	-				-0.6
6,144,392	+		CA265_RS25245	0.16	-1.3
6,144,407	+		CA265_RS25245	0.19	-0.4
6,144,408	-		CA265_RS25245	0.19	-0.7
6,144,429	+		CA265_RS25245	0.23	-1.0
6,144,430	-		CA265_RS25245	0.23	-0.6
6,144,430	-		CA265_RS25245	0.23	-1.8
6,144,451	+		CA265_RS25245	0.26	+0.1
6,144,452	-		CA265_RS25245	0.27	-0.4
6,144,461	-		CA265_RS25245	0.28	-2.1
6,144,461	-		CA265_RS25245	0.28	-0.6
6,144,515	+		CA265_RS25245	0.38	-1.1
6,144,516	-		CA265_RS25245	0.38	-0.1
6,144,529	-		CA265_RS25245	0.40	-0.1
6,144,586	-		CA265_RS25245	0.50	-0.9
6,144,607	+		CA265_RS25245	0.54	+0.1
6,144,749	-		CA265_RS25245	0.79	-1.6
6,144,753	+		CA265_RS25245	0.80	+0.1
6,144,754	-		CA265_RS25245	0.80	-2.6
6,144,759	+		CA265_RS25245	0.81	-0.6
6,144,762	+		CA265_RS25245	0.82	-0.7
6,144,762	+		CA265_RS25245	0.82	-0.1
6,144,763	-		CA265_RS25245	0.82	+0.0
6,144,763	-		CA265_RS25245	0.82	+0.1
6,144,826	-				-0.6
6,144,826	-				-2.1
6,144,829	-				-0.0
6,144,829	-				+0.1
6,144,869	-				-0.3
6,144,933	-				-0.6
6,145,065	+		CA265_RS25250	0.20	-0.8
6,145,101	+		CA265_RS25250	0.24	+1.4
6,145,102	-		CA265_RS25250	0.24	-0.1
6,145,198	-		CA265_RS25250	0.35	+0.4
6,145,232	-		CA265_RS25250	0.39	-1.2