Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS25230
Experiment: R2A with Paraquat dichloride 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Paraquat dichloride 0.003 mg/ml |
---|---|---|---|---|---|
remove | |||||
6,141,290 | + | +2.0 | |||
6,142,032 | + | +1.1 | |||
6,142,038 | - | -0.9 | |||
6,142,153 | + | +2.1 | |||
6,142,156 | - | -1.9 | |||
6,142,309 | + | -1.3 | |||
6,142,417 | + | CA265_RS25235 | 0.14 | -1.6 | |
6,142,430 | + | CA265_RS25235 | 0.15 | -1.1 | |
6,142,462 | + | CA265_RS25235 | 0.17 | -2.5 | |
6,142,519 | + | CA265_RS25235 | 0.21 | -3.3 | |
6,142,520 | - | CA265_RS25235 | 0.21 | -1.3 | |
6,142,586 | - | CA265_RS25235 | 0.25 | +0.2 | |
6,142,599 | - | CA265_RS25235 | 0.26 | -1.0 | |
6,142,670 | - | CA265_RS25235 | 0.31 | -0.4 | |
6,142,745 | + | CA265_RS25235 | 0.36 | -1.0 | |
6,142,748 | + | CA265_RS25235 | 0.36 | -2.8 | |
6,142,873 | - | CA265_RS25235 | 0.44 | -1.5 | |
6,142,944 | - | CA265_RS25235 | 0.49 | -2.5 | |
6,142,946 | - | CA265_RS25235 | 0.49 | -1.5 | |
6,143,016 | - | CA265_RS25235 | 0.53 | -1.5 | |
6,143,016 | - | CA265_RS25235 | 0.53 | -1.7 | |
6,143,031 | - | CA265_RS25235 | 0.54 | -2.1 |
Or see this region's nucleotide sequence