Experiment: R2A with Paraquat dichloride 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS23510 and CA265_RS23515 are separated by 6 nucleotides CA265_RS23515 and CA265_RS23520 are separated by 3 nucleotides CA265_RS23520 and CA265_RS23525 are separated by 79 nucleotides
CA265_RS23510: CA265_RS23510 - energy transducer TonB, at 5,749,676 to 5,750,494
_RS23510
CA265_RS23515: CA265_RS23515 - hypothetical protein, at 5,750,501 to 5,750,728
_RS23515
CA265_RS23520: CA265_RS23520 - phosphate ABC transporter substrate-binding protein, at 5,750,732 to 5,751,634
_RS23520
CA265_RS23525: CA265_RS23525 - hypothetical protein, at 5,751,714 to 5,753,429
_RS23525
Position (kb) 5750
5751
5752 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7 at 5749.762 kb on + strand at 5749.795 kb on - strand, within CA265_RS23510 at 5749.798 kb on + strand, within CA265_RS23510 at 5749.818 kb on + strand, within CA265_RS23510 at 5749.933 kb on + strand, within CA265_RS23510 at 5750.231 kb on - strand, within CA265_RS23510 at 5750.247 kb on + strand, within CA265_RS23510 at 5750.252 kb on - strand, within CA265_RS23510 at 5750.260 kb on + strand, within CA265_RS23510 at 5750.299 kb on + strand, within CA265_RS23510 at 5750.482 kb on + strand at 5750.492 kb on + strand at 5750.492 kb on + strand at 5750.498 kb on + strand at 5750.515 kb on + strand at 5750.515 kb on + strand at 5750.583 kb on - strand, within CA265_RS23515 at 5750.605 kb on + strand, within CA265_RS23515 at 5750.684 kb on - strand, within CA265_RS23515 at 5750.684 kb on - strand, within CA265_RS23515 at 5750.698 kb on - strand, within CA265_RS23515 at 5750.706 kb on + strand at 5750.828 kb on - strand, within CA265_RS23520 at 5750.833 kb on + strand, within CA265_RS23520 at 5750.834 kb on - strand, within CA265_RS23520 at 5750.834 kb on - strand, within CA265_RS23520 at 5750.834 kb on - strand, within CA265_RS23520 at 5750.834 kb on - strand, within CA265_RS23520 at 5750.949 kb on + strand, within CA265_RS23520 at 5750.997 kb on + strand, within CA265_RS23520 at 5751.037 kb on + strand, within CA265_RS23520 at 5751.067 kb on - strand, within CA265_RS23520 at 5751.082 kb on - strand, within CA265_RS23520 at 5751.109 kb on + strand, within CA265_RS23520 at 5751.110 kb on - strand, within CA265_RS23520 at 5751.136 kb on + strand, within CA265_RS23520 at 5751.137 kb on - strand, within CA265_RS23520 at 5751.138 kb on + strand, within CA265_RS23520 at 5751.139 kb on - strand, within CA265_RS23520 at 5751.141 kb on + strand, within CA265_RS23520 at 5751.185 kb on + strand, within CA265_RS23520 at 5751.313 kb on + strand, within CA265_RS23520 at 5751.363 kb on - strand, within CA265_RS23520 at 5751.411 kb on + strand, within CA265_RS23520 at 5751.412 kb on - strand, within CA265_RS23520 at 5751.426 kb on - strand, within CA265_RS23520 at 5751.426 kb on - strand at 5751.451 kb on - strand, within CA265_RS23520 at 5751.483 kb on + strand, within CA265_RS23520 at 5751.484 kb on - strand, within CA265_RS23520 at 5751.484 kb on - strand, within CA265_RS23520 at 5751.541 kb on - strand, within CA265_RS23520 at 5751.742 kb on + strand at 5751.927 kb on - strand, within CA265_RS23525 at 5751.938 kb on + strand, within CA265_RS23525 at 5751.946 kb on + strand, within CA265_RS23525 at 5751.950 kb on + strand, within CA265_RS23525 at 5752.014 kb on - strand, within CA265_RS23525 at 5752.113 kb on + strand at 5752.144 kb on + strand, within CA265_RS23525 at 5752.145 kb on - strand, within CA265_RS23525 at 5752.149 kb on - strand, within CA265_RS23525 at 5752.248 kb on + strand, within CA265_RS23525 at 5752.249 kb on - strand, within CA265_RS23525 at 5752.279 kb on + strand, within CA265_RS23525 at 5752.279 kb on + strand, within CA265_RS23525 at 5752.280 kb on - strand, within CA265_RS23525 at 5752.288 kb on - strand, within CA265_RS23525 at 5752.399 kb on + strand, within CA265_RS23525 at 5752.400 kb on - strand, within CA265_RS23525 at 5752.400 kb on - strand, within CA265_RS23525 at 5752.419 kb on + strand, within CA265_RS23525 at 5752.450 kb on + strand, within CA265_RS23525 at 5752.451 kb on - strand, within CA265_RS23525 at 5752.456 kb on + strand, within CA265_RS23525 at 5752.457 kb on - strand, within CA265_RS23525 at 5752.457 kb on - strand, within CA265_RS23525 at 5752.482 kb on - strand, within CA265_RS23525 at 5752.532 kb on - strand, within CA265_RS23525
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.003 mg/ml remove 5,749,762 + +0.9 5,749,795 - CA265_RS23510 0.15 +2.1 5,749,798 + CA265_RS23510 0.15 +2.8 5,749,818 + CA265_RS23510 0.17 +2.1 5,749,933 + CA265_RS23510 0.31 +3.1 5,750,231 - CA265_RS23510 0.68 +2.2 5,750,247 + CA265_RS23510 0.70 +3.0 5,750,252 - CA265_RS23510 0.70 +1.1 5,750,260 + CA265_RS23510 0.71 +2.4 5,750,299 + CA265_RS23510 0.76 +2.8 5,750,482 + +3.4 5,750,492 + +2.6 5,750,492 + +2.5 5,750,498 + +2.0 5,750,515 + +1.2 5,750,515 + +1.9 5,750,583 - CA265_RS23515 0.36 -0.3 5,750,605 + CA265_RS23515 0.46 +0.6 5,750,684 - CA265_RS23515 0.80 -0.2 5,750,684 - CA265_RS23515 0.80 +0.2 5,750,698 - CA265_RS23515 0.86 +1.1 5,750,706 + +0.5 5,750,828 - CA265_RS23520 0.11 +1.5 5,750,833 + CA265_RS23520 0.11 +1.3 5,750,834 - CA265_RS23520 0.11 +1.5 5,750,834 - CA265_RS23520 0.11 +0.7 5,750,834 - CA265_RS23520 0.11 +1.9 5,750,834 - CA265_RS23520 0.11 +1.7 5,750,949 + CA265_RS23520 0.24 +0.6 5,750,997 + CA265_RS23520 0.29 +1.5 5,751,037 + CA265_RS23520 0.34 +0.6 5,751,067 - CA265_RS23520 0.37 +1.0 5,751,082 - CA265_RS23520 0.39 +1.3 5,751,109 + CA265_RS23520 0.42 -1.4 5,751,110 - CA265_RS23520 0.42 +0.0 5,751,136 + CA265_RS23520 0.45 +0.3 5,751,137 - CA265_RS23520 0.45 +1.5 5,751,138 + CA265_RS23520 0.45 +0.0 5,751,139 - CA265_RS23520 0.45 +0.6 5,751,141 + CA265_RS23520 0.45 -0.1 5,751,185 + CA265_RS23520 0.50 +1.0 5,751,313 + CA265_RS23520 0.64 +2.3 5,751,363 - CA265_RS23520 0.70 +1.2 5,751,411 + CA265_RS23520 0.75 +0.8 5,751,412 - CA265_RS23520 0.75 +1.6 5,751,426 - CA265_RS23520 0.77 +1.7 5,751,426 - +2.9 5,751,451 - CA265_RS23520 0.80 +1.4 5,751,483 + CA265_RS23520 0.83 +1.1 5,751,484 - CA265_RS23520 0.83 +2.1 5,751,484 - CA265_RS23520 0.83 +1.7 5,751,541 - CA265_RS23520 0.90 +3.1 5,751,742 + +6.2 5,751,927 - CA265_RS23525 0.12 +7.0 5,751,938 + CA265_RS23525 0.13 +6.2 5,751,946 + CA265_RS23525 0.14 +6.8 5,751,950 + CA265_RS23525 0.14 +7.1 5,752,014 - CA265_RS23525 0.17 +6.6 5,752,113 + +5.9 5,752,144 + CA265_RS23525 0.25 +7.0 5,752,145 - CA265_RS23525 0.25 +6.0 5,752,149 - CA265_RS23525 0.25 +7.3 5,752,248 + CA265_RS23525 0.31 +6.8 5,752,249 - CA265_RS23525 0.31 +6.1 5,752,279 + CA265_RS23525 0.33 +6.4 5,752,279 + CA265_RS23525 0.33 +7.7 5,752,280 - CA265_RS23525 0.33 +7.4 5,752,288 - CA265_RS23525 0.33 +6.8 5,752,399 + CA265_RS23525 0.40 +7.0 5,752,400 - CA265_RS23525 0.40 +6.8 5,752,400 - CA265_RS23525 0.40 +7.6 5,752,419 + CA265_RS23525 0.41 +5.8 5,752,450 + CA265_RS23525 0.43 +6.4 5,752,451 - CA265_RS23525 0.43 +7.3 5,752,456 + CA265_RS23525 0.43 +6.3 5,752,457 - CA265_RS23525 0.43 +6.6 5,752,457 - CA265_RS23525 0.43 +6.9 5,752,482 - CA265_RS23525 0.45 +6.9 5,752,532 - CA265_RS23525 0.48 +6.7
Or see this region's nucleotide sequence