Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS21395

Experiment: R2A with Paraquat dichloride 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS21385 and CA265_RS21390 are separated by 109 nucleotidesCA265_RS21390 and CA265_RS21395 overlap by 4 nucleotidesCA265_RS21395 and CA265_RS21400 are separated by 1 nucleotides CA265_RS21385: CA265_RS21385 - aldehyde dehydrogenase family protein, at 5,275,253 to 5,276,650 _RS21385 CA265_RS21390: CA265_RS21390 - metal-dependent hydrolase, at 5,276,760 to 5,277,284 _RS21390 CA265_RS21395: CA265_RS21395 - hypothetical protein, at 5,277,281 to 5,277,757 _RS21395 CA265_RS21400: CA265_RS21400 - heavy metal transporter, at 5,277,759 to 5,278,478 _RS21400 Position (kb) 5277 5278Strain fitness (log2 ratio) -2 -1 0 1 2at 5276.299 kb on + strand, within CA265_RS21385at 5276.299 kb on + strand, within CA265_RS21385at 5276.299 kb on + strand, within CA265_RS21385at 5276.300 kb on - strand, within CA265_RS21385at 5276.365 kb on - strand, within CA265_RS21385at 5276.365 kb on - strand, within CA265_RS21385at 5276.386 kb on + strand, within CA265_RS21385at 5276.386 kb on + strand, within CA265_RS21385at 5276.456 kb on - strand, within CA265_RS21385at 5276.503 kb on - strand, within CA265_RS21385at 5276.603 kb on + strandat 5276.603 kb on + strandat 5276.603 kb on + strandat 5276.603 kb on + strandat 5276.603 kb on + strandat 5276.604 kb on - strandat 5276.604 kb on - strandat 5276.604 kb on - strandat 5276.649 kb on - strandat 5276.649 kb on - strandat 5276.649 kb on - strandat 5276.768 kb on - strandat 5276.768 kb on - strandat 5276.894 kb on - strand, within CA265_RS21390at 5276.978 kb on + strand, within CA265_RS21390at 5276.985 kb on + strand, within CA265_RS21390at 5276.985 kb on + strand, within CA265_RS21390at 5276.996 kb on + strand, within CA265_RS21390at 5276.997 kb on - strand, within CA265_RS21390at 5276.997 kb on - strand, within CA265_RS21390at 5277.017 kb on + strand, within CA265_RS21390at 5277.017 kb on + strand, within CA265_RS21390at 5277.036 kb on + strand, within CA265_RS21390at 5277.072 kb on - strand, within CA265_RS21390at 5277.174 kb on + strand, within CA265_RS21390at 5277.177 kb on - strand, within CA265_RS21390at 5277.203 kb on + strand, within CA265_RS21390at 5277.203 kb on + strandat 5277.204 kb on - strand, within CA265_RS21390at 5277.225 kb on - strand, within CA265_RS21390at 5277.263 kb on + strandat 5277.264 kb on - strandat 5277.264 kb on - strandat 5277.269 kb on + strandat 5277.475 kb on - strand, within CA265_RS21395at 5277.491 kb on - strand, within CA265_RS21395at 5277.632 kb on - strand, within CA265_RS21395at 5277.662 kb on + strand, within CA265_RS21395at 5277.743 kb on + strandat 5277.756 kb on - strandat 5277.760 kb on + strandat 5277.760 kb on + strandat 5277.760 kb on + strandat 5277.761 kb on - strandat 5277.782 kb on + strandat 5277.921 kb on + strand, within CA265_RS21400at 5277.943 kb on - strand, within CA265_RS21400at 5277.964 kb on - strand, within CA265_RS21400at 5278.004 kb on - strand, within CA265_RS21400at 5278.007 kb on + strand, within CA265_RS21400at 5278.007 kb on + strand, within CA265_RS21400at 5278.007 kb on + strand, within CA265_RS21400at 5278.008 kb on - strand, within CA265_RS21400at 5278.008 kb on - strand, within CA265_RS21400at 5278.008 kb on - strand, within CA265_RS21400at 5278.009 kb on + strand, within CA265_RS21400at 5278.045 kb on + strand, within CA265_RS21400at 5278.125 kb on + strand, within CA265_RS21400at 5278.133 kb on + strand, within CA265_RS21400at 5278.138 kb on - strand, within CA265_RS21400at 5278.138 kb on - strand, within CA265_RS21400at 5278.191 kb on - strand, within CA265_RS21400at 5278.195 kb on + strand, within CA265_RS21400at 5278.223 kb on - strand, within CA265_RS21400at 5278.285 kb on + strand, within CA265_RS21400at 5278.293 kb on - strand, within CA265_RS21400at 5278.326 kb on + strand, within CA265_RS21400at 5278.326 kb on + strand, within CA265_RS21400at 5278.326 kb on + strand, within CA265_RS21400at 5278.326 kb on + strand, within CA265_RS21400at 5278.346 kb on + strand, within CA265_RS21400at 5278.349 kb on + strand, within CA265_RS21400at 5278.349 kb on + strand, within CA265_RS21400at 5278.349 kb on + strand, within CA265_RS21400at 5278.423 kb on - strandat 5278.465 kb on + strandat 5278.492 kb on - strandat 5278.533 kb on + strandat 5278.533 kb on + strandat 5278.533 kb on + strandat 5278.562 kb on + strandat 5278.578 kb on + strandat 5278.609 kb on + strandat 5278.609 kb on + strandat 5278.613 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.003 mg/ml
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5,276,299 + CA265_RS21385 0.75 +0.3
5,276,299 + CA265_RS21385 0.75 -0.2
5,276,299 + CA265_RS21385 0.75 -1.0
5,276,300 - CA265_RS21385 0.75 -0.7
5,276,365 - CA265_RS21385 0.80 +0.6
5,276,365 - CA265_RS21385 0.80 +0.2
5,276,386 + CA265_RS21385 0.81 -0.8
5,276,386 + CA265_RS21385 0.81 +0.1
5,276,456 - CA265_RS21385 0.86 +0.2
5,276,503 - CA265_RS21385 0.89 -0.4
5,276,603 + +0.4
5,276,603 + -0.1
5,276,603 + +0.2
5,276,603 + +0.5
5,276,603 + -0.2
5,276,604 - +0.2
5,276,604 - +0.2
5,276,604 - -0.4
5,276,649 - +1.3
5,276,649 - +0.6
5,276,649 - +0.4
5,276,768 - -1.3
5,276,768 - +1.6
5,276,894 - CA265_RS21390 0.26 +1.4
5,276,978 + CA265_RS21390 0.42 +0.8
5,276,985 + CA265_RS21390 0.43 -1.8
5,276,985 + CA265_RS21390 0.43 -0.2
5,276,996 + CA265_RS21390 0.45 +1.3
5,276,997 - CA265_RS21390 0.45 +1.0
5,276,997 - CA265_RS21390 0.45 +0.7
5,277,017 + CA265_RS21390 0.49 +0.8
5,277,017 + CA265_RS21390 0.49 -0.1
5,277,036 + CA265_RS21390 0.53 -0.9
5,277,072 - CA265_RS21390 0.59 +2.0
5,277,174 + CA265_RS21390 0.79 -0.4
5,277,177 - CA265_RS21390 0.79 -1.6
5,277,203 + CA265_RS21390 0.84 +0.8
5,277,203 + +2.0
5,277,204 - CA265_RS21390 0.85 -0.2
5,277,225 - CA265_RS21390 0.89 +1.2
5,277,263 + -1.6
5,277,264 - +0.2
5,277,264 - +0.6
5,277,269 + +0.5
5,277,475 - CA265_RS21395 0.41 +0.8
5,277,491 - CA265_RS21395 0.44 +2.1
5,277,632 - CA265_RS21395 0.74 -0.4
5,277,662 + CA265_RS21395 0.80 -0.2
5,277,743 + +0.6
5,277,756 - +1.0
5,277,760 + +1.0
5,277,760 + +0.8
5,277,760 + +0.0
5,277,761 - +0.5
5,277,782 + +0.9
5,277,921 + CA265_RS21400 0.23 -1.0
5,277,943 - CA265_RS21400 0.26 +0.8
5,277,964 - CA265_RS21400 0.28 +0.5
5,278,004 - CA265_RS21400 0.34 +0.9
5,278,007 + CA265_RS21400 0.34 -0.6
5,278,007 + CA265_RS21400 0.34 +0.6
5,278,007 + CA265_RS21400 0.34 +0.1
5,278,008 - CA265_RS21400 0.35 +1.9
5,278,008 - CA265_RS21400 0.35 +1.3
5,278,008 - CA265_RS21400 0.35 +0.4
5,278,009 + CA265_RS21400 0.35 +0.9
5,278,045 + CA265_RS21400 0.40 -0.1
5,278,125 + CA265_RS21400 0.51 -0.1
5,278,133 + CA265_RS21400 0.52 +1.6
5,278,138 - CA265_RS21400 0.53 +0.7
5,278,138 - CA265_RS21400 0.53 -0.5
5,278,191 - CA265_RS21400 0.60 -0.3
5,278,195 + CA265_RS21400 0.61 -0.5
5,278,223 - CA265_RS21400 0.64 -0.5
5,278,285 + CA265_RS21400 0.73 +0.5
5,278,293 - CA265_RS21400 0.74 +1.3
5,278,326 + CA265_RS21400 0.79 -0.6
5,278,326 + CA265_RS21400 0.79 -1.4
5,278,326 + CA265_RS21400 0.79 -1.5
5,278,326 + CA265_RS21400 0.79 +0.1
5,278,346 + CA265_RS21400 0.82 +0.2
5,278,349 + CA265_RS21400 0.82 +0.0
5,278,349 + CA265_RS21400 0.82 -0.5
5,278,349 + CA265_RS21400 0.82 -1.1
5,278,423 - -0.7
5,278,465 + -0.3
5,278,492 - -0.9
5,278,533 + +0.5
5,278,533 + -1.0
5,278,533 + +0.4
5,278,562 + +0.2
5,278,578 + +0.8
5,278,609 + +0.1
5,278,609 + +1.9
5,278,613 + -0.6

Or see this region's nucleotide sequence