Experiment: R2A with Paraquat dichloride 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20605 and CA265_RS20610 overlap by 83 nucleotides CA265_RS20610 and CA265_RS20615 are separated by 71 nucleotides CA265_RS20615 and CA265_RS20620 overlap by 7 nucleotides CA265_RS20620 and CA265_RS20625 are separated by 80 nucleotides
CA265_RS20605: CA265_RS20605 - hypothetical protein, at 5,098,354 to 5,099,613
_RS20605
CA265_RS20610: CA265_RS20610 - hypothetical protein, at 5,099,531 to 5,100,010
_RS20610
CA265_RS20615: CA265_RS20615 - hypothetical protein, at 5,100,082 to 5,102,697
_RS20615
CA265_RS20620: CA265_RS20620 - hypothetical protein, at 5,102,691 to 5,103,338
_RS20620
CA265_RS20625: CA265_RS20625 - hypothetical protein, at 5,103,419 to 5,104,144
_RS20625
Position (kb) 5100
5101
5102
5103 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5099.091 kb on + strand, within CA265_RS20605 at 5099.095 kb on + strand, within CA265_RS20605 at 5099.095 kb on + strand, within CA265_RS20605 at 5099.095 kb on + strand, within CA265_RS20605 at 5099.096 kb on - strand, within CA265_RS20605 at 5099.121 kb on + strand, within CA265_RS20605 at 5099.163 kb on - strand, within CA265_RS20605 at 5099.196 kb on + strand, within CA265_RS20605 at 5099.201 kb on - strand, within CA265_RS20605 at 5099.282 kb on + strand, within CA265_RS20605 at 5099.283 kb on - strand, within CA265_RS20605 at 5099.283 kb on - strand, within CA265_RS20605 at 5099.286 kb on + strand, within CA265_RS20605 at 5099.286 kb on + strand, within CA265_RS20605 at 5099.301 kb on + strand, within CA265_RS20605 at 5099.311 kb on - strand, within CA265_RS20605 at 5099.318 kb on + strand, within CA265_RS20605 at 5099.319 kb on - strand, within CA265_RS20605 at 5099.319 kb on - strand, within CA265_RS20605 at 5099.352 kb on + strand, within CA265_RS20605 at 5099.386 kb on + strand, within CA265_RS20605 at 5099.386 kb on + strand, within CA265_RS20605 at 5099.387 kb on - strand, within CA265_RS20605 at 5099.387 kb on - strand, within CA265_RS20605 at 5099.387 kb on - strand, within CA265_RS20605 at 5099.388 kb on + strand, within CA265_RS20605 at 5099.434 kb on + strand, within CA265_RS20605 at 5099.521 kb on + strand at 5099.566 kb on + strand at 5099.567 kb on - strand at 5099.600 kb on + strand at 5099.650 kb on + strand, within CA265_RS20610 at 5099.651 kb on - strand, within CA265_RS20610 at 5099.764 kb on + strand, within CA265_RS20610 at 5099.764 kb on + strand, within CA265_RS20610 at 5099.886 kb on + strand, within CA265_RS20610 at 5099.930 kb on - strand, within CA265_RS20610 at 5100.129 kb on - strand at 5100.174 kb on + strand at 5100.175 kb on - strand at 5100.195 kb on + strand at 5100.213 kb on + strand at 5100.295 kb on + strand at 5100.296 kb on - strand at 5100.342 kb on + strand at 5100.419 kb on - strand, within CA265_RS20615 at 5100.435 kb on + strand, within CA265_RS20615 at 5100.442 kb on + strand, within CA265_RS20615 at 5100.498 kb on + strand, within CA265_RS20615 at 5100.498 kb on + strand, within CA265_RS20615 at 5100.501 kb on - strand, within CA265_RS20615 at 5100.562 kb on - strand, within CA265_RS20615 at 5100.562 kb on - strand, within CA265_RS20615 at 5100.589 kb on - strand, within CA265_RS20615 at 5100.683 kb on + strand, within CA265_RS20615 at 5100.754 kb on - strand, within CA265_RS20615 at 5100.754 kb on - strand, within CA265_RS20615 at 5100.754 kb on - strand, within CA265_RS20615 at 5100.757 kb on + strand, within CA265_RS20615 at 5100.758 kb on - strand, within CA265_RS20615 at 5100.788 kb on - strand, within CA265_RS20615 at 5100.941 kb on + strand, within CA265_RS20615 at 5100.941 kb on + strand, within CA265_RS20615 at 5100.941 kb on + strand, within CA265_RS20615 at 5100.942 kb on - strand, within CA265_RS20615 at 5101.045 kb on + strand, within CA265_RS20615 at 5101.046 kb on - strand, within CA265_RS20615 at 5101.060 kb on - strand, within CA265_RS20615 at 5101.061 kb on + strand, within CA265_RS20615 at 5101.062 kb on - strand, within CA265_RS20615 at 5101.096 kb on - strand, within CA265_RS20615 at 5101.174 kb on - strand, within CA265_RS20615 at 5101.176 kb on + strand, within CA265_RS20615 at 5101.177 kb on - strand, within CA265_RS20615 at 5101.183 kb on - strand, within CA265_RS20615 at 5101.247 kb on - strand, within CA265_RS20615 at 5101.263 kb on + strand, within CA265_RS20615 at 5101.263 kb on + strand, within CA265_RS20615 at 5101.264 kb on - strand, within CA265_RS20615 at 5101.287 kb on + strand, within CA265_RS20615 at 5101.288 kb on - strand, within CA265_RS20615 at 5101.288 kb on - strand, within CA265_RS20615 at 5101.304 kb on - strand, within CA265_RS20615 at 5101.330 kb on + strand, within CA265_RS20615 at 5101.336 kb on + strand, within CA265_RS20615 at 5101.336 kb on + strand, within CA265_RS20615 at 5101.336 kb on + strand, within CA265_RS20615 at 5101.343 kb on - strand, within CA265_RS20615 at 5101.393 kb on + strand, within CA265_RS20615 at 5101.393 kb on + strand, within CA265_RS20615 at 5101.394 kb on - strand, within CA265_RS20615 at 5101.420 kb on + strand, within CA265_RS20615 at 5101.430 kb on - strand, within CA265_RS20615 at 5101.454 kb on - strand, within CA265_RS20615 at 5101.455 kb on + strand, within CA265_RS20615 at 5101.455 kb on + strand, within CA265_RS20615 at 5101.498 kb on - strand, within CA265_RS20615 at 5101.499 kb on + strand, within CA265_RS20615 at 5101.499 kb on + strand, within CA265_RS20615 at 5101.506 kb on + strand, within CA265_RS20615 at 5101.584 kb on + strand, within CA265_RS20615 at 5101.602 kb on + strand, within CA265_RS20615 at 5101.603 kb on - strand, within CA265_RS20615 at 5101.603 kb on - strand, within CA265_RS20615 at 5101.604 kb on + strand, within CA265_RS20615 at 5101.604 kb on + strand, within CA265_RS20615 at 5101.604 kb on + strand, within CA265_RS20615 at 5101.605 kb on - strand, within CA265_RS20615 at 5101.671 kb on + strand, within CA265_RS20615 at 5101.671 kb on + strand, within CA265_RS20615 at 5101.672 kb on - strand, within CA265_RS20615 at 5101.833 kb on + strand, within CA265_RS20615 at 5101.925 kb on - strand, within CA265_RS20615 at 5101.965 kb on + strand, within CA265_RS20615 at 5101.966 kb on - strand, within CA265_RS20615 at 5101.974 kb on + strand, within CA265_RS20615 at 5101.975 kb on + strand, within CA265_RS20615 at 5101.981 kb on + strand, within CA265_RS20615 at 5101.981 kb on + strand, within CA265_RS20615 at 5101.986 kb on + strand, within CA265_RS20615 at 5101.993 kb on - strand, within CA265_RS20615 at 5102.008 kb on - strand, within CA265_RS20615 at 5102.050 kb on - strand, within CA265_RS20615 at 5102.089 kb on - strand, within CA265_RS20615 at 5102.127 kb on + strand, within CA265_RS20615 at 5102.148 kb on + strand, within CA265_RS20615 at 5102.148 kb on + strand, within CA265_RS20615 at 5102.236 kb on - strand, within CA265_RS20615 at 5102.256 kb on + strand, within CA265_RS20615 at 5102.314 kb on - strand, within CA265_RS20615 at 5102.318 kb on - strand, within CA265_RS20615 at 5102.332 kb on - strand, within CA265_RS20615 at 5102.363 kb on - strand, within CA265_RS20615 at 5102.368 kb on + strand, within CA265_RS20615 at 5102.418 kb on + strand, within CA265_RS20615 at 5102.460 kb on - strand at 5102.463 kb on + strand at 5102.463 kb on + strand at 5102.463 kb on + strand at 5102.464 kb on - strand at 5102.526 kb on - strand at 5102.553 kb on + strand at 5102.553 kb on + strand at 5102.554 kb on - strand at 5102.572 kb on - strand at 5102.646 kb on + strand at 5102.657 kb on - strand at 5102.657 kb on - strand at 5102.657 kb on - strand at 5102.679 kb on + strand at 5102.683 kb on + strand at 5102.684 kb on - strand at 5102.813 kb on - strand, within CA265_RS20620 at 5102.882 kb on + strand, within CA265_RS20620 at 5102.968 kb on + strand, within CA265_RS20620 at 5102.968 kb on + strand, within CA265_RS20620 at 5102.969 kb on - strand, within CA265_RS20620 at 5102.969 kb on - strand, within CA265_RS20620 at 5102.969 kb on - strand, within CA265_RS20620 at 5102.973 kb on + strand, within CA265_RS20620 at 5102.978 kb on + strand, within CA265_RS20620 at 5102.979 kb on - strand, within CA265_RS20620 at 5102.981 kb on + strand, within CA265_RS20620 at 5103.053 kb on - strand, within CA265_RS20620 at 5103.090 kb on - strand, within CA265_RS20620 at 5103.092 kb on - strand, within CA265_RS20620 at 5103.192 kb on + strand, within CA265_RS20620 at 5103.193 kb on - strand, within CA265_RS20620 at 5103.193 kb on - strand, within CA265_RS20620 at 5103.224 kb on + strand, within CA265_RS20620 at 5103.224 kb on + strand, within CA265_RS20620 at 5103.224 kb on + strand, within CA265_RS20620 at 5103.263 kb on + strand, within CA265_RS20620 at 5103.264 kb on - strand, within CA265_RS20620 at 5103.264 kb on - strand, within CA265_RS20620 at 5103.266 kb on - strand, within CA265_RS20620 at 5103.304 kb on - strand at 5103.350 kb on + strand at 5103.470 kb on + strand at 5103.471 kb on - strand at 5103.473 kb on + strand at 5103.493 kb on + strand, within CA265_RS20625 at 5103.494 kb on - strand, within CA265_RS20625 at 5103.497 kb on - strand, within CA265_RS20625 at 5103.529 kb on + strand, within CA265_RS20625 at 5103.529 kb on + strand, within CA265_RS20625 at 5103.547 kb on + strand, within CA265_RS20625 at 5103.547 kb on + strand, within CA265_RS20625 at 5103.547 kb on + strand, within CA265_RS20625 at 5103.550 kb on - strand, within CA265_RS20625 at 5103.565 kb on + strand, within CA265_RS20625 at 5103.565 kb on + strand, within CA265_RS20625 at 5103.591 kb on - strand, within CA265_RS20625 at 5103.607 kb on + strand, within CA265_RS20625 at 5103.609 kb on - strand, within CA265_RS20625 at 5103.627 kb on - strand, within CA265_RS20625 at 5103.632 kb on - strand, within CA265_RS20625 at 5103.652 kb on + strand, within CA265_RS20625 at 5103.653 kb on - strand, within CA265_RS20625 at 5103.655 kb on - strand, within CA265_RS20625 at 5103.659 kb on + strand, within CA265_RS20625
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.003 mg/ml remove 5,099,091 + CA265_RS20605 0.58 -1.1 5,099,095 + CA265_RS20605 0.59 +0.6 5,099,095 + CA265_RS20605 0.59 -0.2 5,099,095 + CA265_RS20605 0.59 -0.6 5,099,096 - CA265_RS20605 0.59 +0.6 5,099,121 + CA265_RS20605 0.61 -1.9 5,099,163 - CA265_RS20605 0.64 -0.2 5,099,196 + CA265_RS20605 0.67 -1.6 5,099,201 - CA265_RS20605 0.67 +0.9 5,099,282 + CA265_RS20605 0.74 +1.2 5,099,283 - CA265_RS20605 0.74 +2.1 5,099,283 - CA265_RS20605 0.74 +1.6 5,099,286 + CA265_RS20605 0.74 +0.8 5,099,286 + CA265_RS20605 0.74 -0.4 5,099,301 + CA265_RS20605 0.75 -0.6 5,099,311 - CA265_RS20605 0.76 +2.8 5,099,318 + CA265_RS20605 0.77 -1.0 5,099,319 - CA265_RS20605 0.77 +1.3 5,099,319 - CA265_RS20605 0.77 +0.0 5,099,352 + CA265_RS20605 0.79 -2.0 5,099,386 + CA265_RS20605 0.82 +0.0 5,099,386 + CA265_RS20605 0.82 -0.4 5,099,387 - CA265_RS20605 0.82 +0.8 5,099,387 - CA265_RS20605 0.82 +0.3 5,099,387 - CA265_RS20605 0.82 +1.0 5,099,388 + CA265_RS20605 0.82 +0.7 5,099,434 + CA265_RS20605 0.86 -0.6 5,099,521 + +1.0 5,099,566 + -0.9 5,099,567 - +2.4 5,099,600 + +0.0 5,099,650 + CA265_RS20610 0.25 +0.5 5,099,651 - CA265_RS20610 0.25 +4.5 5,099,764 + CA265_RS20610 0.49 -0.7 5,099,764 + CA265_RS20610 0.49 -0.9 5,099,886 + CA265_RS20610 0.74 +0.1 5,099,930 - CA265_RS20610 0.83 -0.4 5,100,129 - +2.1 5,100,174 + -0.2 5,100,175 - +0.6 5,100,195 + -0.1 5,100,213 + +0.3 5,100,295 + -1.0 5,100,296 - +3.2 5,100,342 + -0.7 5,100,419 - CA265_RS20615 0.13 +1.9 5,100,435 + CA265_RS20615 0.13 +0.3 5,100,442 + CA265_RS20615 0.14 -0.8 5,100,498 + CA265_RS20615 0.16 +0.4 5,100,498 + CA265_RS20615 0.16 -0.4 5,100,501 - CA265_RS20615 0.16 +0.8 5,100,562 - CA265_RS20615 0.18 +3.3 5,100,562 - CA265_RS20615 0.18 +0.7 5,100,589 - CA265_RS20615 0.19 +0.7 5,100,683 + CA265_RS20615 0.23 -0.4 5,100,754 - CA265_RS20615 0.26 +2.9 5,100,754 - CA265_RS20615 0.26 +1.2 5,100,754 - CA265_RS20615 0.26 +1.4 5,100,757 + CA265_RS20615 0.26 -0.8 5,100,758 - CA265_RS20615 0.26 +1.8 5,100,788 - CA265_RS20615 0.27 +1.3 5,100,941 + CA265_RS20615 0.33 -0.7 5,100,941 + CA265_RS20615 0.33 +0.1 5,100,941 + CA265_RS20615 0.33 -1.6 5,100,942 - CA265_RS20615 0.33 -1.3 5,101,045 + CA265_RS20615 0.37 -0.7 5,101,046 - CA265_RS20615 0.37 -0.5 5,101,060 - CA265_RS20615 0.37 +0.7 5,101,061 + CA265_RS20615 0.37 -0.6 5,101,062 - CA265_RS20615 0.37 +1.3 5,101,096 - CA265_RS20615 0.39 +0.4 5,101,174 - CA265_RS20615 0.42 +0.0 5,101,176 + CA265_RS20615 0.42 -0.1 5,101,177 - CA265_RS20615 0.42 +0.6 5,101,183 - CA265_RS20615 0.42 +2.2 5,101,247 - CA265_RS20615 0.45 +1.3 5,101,263 + CA265_RS20615 0.45 -0.7 5,101,263 + CA265_RS20615 0.45 +1.2 5,101,264 - CA265_RS20615 0.45 +0.1 5,101,287 + CA265_RS20615 0.46 -1.6 5,101,288 - CA265_RS20615 0.46 +0.9 5,101,288 - CA265_RS20615 0.46 +0.4 5,101,304 - CA265_RS20615 0.47 +0.1 5,101,330 + CA265_RS20615 0.48 -2.2 5,101,336 + CA265_RS20615 0.48 +0.7 5,101,336 + CA265_RS20615 0.48 +0.0 5,101,336 + CA265_RS20615 0.48 -0.6 5,101,343 - CA265_RS20615 0.48 +2.2 5,101,393 + CA265_RS20615 0.50 +0.4 5,101,393 + CA265_RS20615 0.50 -1.0 5,101,394 - CA265_RS20615 0.50 +0.2 5,101,420 + CA265_RS20615 0.51 -2.3 5,101,430 - CA265_RS20615 0.52 -1.0 5,101,454 - CA265_RS20615 0.52 +1.6 5,101,455 + CA265_RS20615 0.52 -0.7 5,101,455 + CA265_RS20615 0.52 -0.1 5,101,498 - CA265_RS20615 0.54 +0.9 5,101,499 + CA265_RS20615 0.54 -0.4 5,101,499 + CA265_RS20615 0.54 -0.1 5,101,506 + CA265_RS20615 0.54 +0.1 5,101,584 + CA265_RS20615 0.57 +0.5 5,101,602 + CA265_RS20615 0.58 +0.4 5,101,603 - CA265_RS20615 0.58 +0.3 5,101,603 - CA265_RS20615 0.58 +0.5 5,101,604 + CA265_RS20615 0.58 -1.1 5,101,604 + CA265_RS20615 0.58 -0.4 5,101,604 + CA265_RS20615 0.58 -0.5 5,101,605 - CA265_RS20615 0.58 +1.1 5,101,671 + CA265_RS20615 0.61 -0.9 5,101,671 + CA265_RS20615 0.61 -0.3 5,101,672 - CA265_RS20615 0.61 +1.2 5,101,833 + CA265_RS20615 0.67 -0.9 5,101,925 - CA265_RS20615 0.70 +1.0 5,101,965 + CA265_RS20615 0.72 +0.1 5,101,966 - CA265_RS20615 0.72 +1.0 5,101,974 + CA265_RS20615 0.72 +0.0 5,101,975 + CA265_RS20615 0.72 -0.8 5,101,981 + CA265_RS20615 0.73 +0.9 5,101,981 + CA265_RS20615 0.73 +0.5 5,101,986 + CA265_RS20615 0.73 -0.7 5,101,993 - CA265_RS20615 0.73 +1.0 5,102,008 - CA265_RS20615 0.74 +1.0 5,102,050 - CA265_RS20615 0.75 -0.3 5,102,089 - CA265_RS20615 0.77 -0.5 5,102,127 + CA265_RS20615 0.78 -0.7 5,102,148 + CA265_RS20615 0.79 -0.1 5,102,148 + CA265_RS20615 0.79 +0.1 5,102,236 - CA265_RS20615 0.82 -0.1 5,102,256 + CA265_RS20615 0.83 -2.1 5,102,314 - CA265_RS20615 0.85 +1.0 5,102,318 - CA265_RS20615 0.85 +2.9 5,102,332 - CA265_RS20615 0.86 +0.9 5,102,363 - CA265_RS20615 0.87 +0.4 5,102,368 + CA265_RS20615 0.87 -0.1 5,102,418 + CA265_RS20615 0.89 +0.0 5,102,460 - +0.3 5,102,463 + -0.0 5,102,463 + -1.2 5,102,463 + -1.1 5,102,464 - +0.6 5,102,526 - +1.2 5,102,553 + +0.0 5,102,553 + -1.3 5,102,554 - +1.0 5,102,572 - +1.0 5,102,646 + -1.0 5,102,657 - -0.0 5,102,657 - -0.4 5,102,657 - +0.4 5,102,679 + +0.8 5,102,683 + -0.9 5,102,684 - +0.6 5,102,813 - CA265_RS20620 0.19 +0.7 5,102,882 + CA265_RS20620 0.29 -0.5 5,102,968 + CA265_RS20620 0.43 +0.0 5,102,968 + CA265_RS20620 0.43 +0.1 5,102,969 - CA265_RS20620 0.43 +0.4 5,102,969 - CA265_RS20620 0.43 +0.6 5,102,969 - CA265_RS20620 0.43 -0.2 5,102,973 + CA265_RS20620 0.44 -0.4 5,102,978 + CA265_RS20620 0.44 -0.9 5,102,979 - CA265_RS20620 0.44 -0.7 5,102,981 + CA265_RS20620 0.45 -0.8 5,103,053 - CA265_RS20620 0.56 -0.5 5,103,090 - CA265_RS20620 0.62 +0.1 5,103,092 - CA265_RS20620 0.62 +0.3 5,103,192 + CA265_RS20620 0.77 +0.0 5,103,193 - CA265_RS20620 0.77 +0.4 5,103,193 - CA265_RS20620 0.77 +1.7 5,103,224 + CA265_RS20620 0.82 +0.4 5,103,224 + CA265_RS20620 0.82 +0.3 5,103,224 + CA265_RS20620 0.82 -1.0 5,103,263 + CA265_RS20620 0.88 +0.5 5,103,264 - CA265_RS20620 0.88 +1.5 5,103,264 - CA265_RS20620 0.88 -0.1 5,103,266 - CA265_RS20620 0.89 -0.1 5,103,304 - -0.3 5,103,350 + -0.2 5,103,470 + +2.6 5,103,471 - +0.9 5,103,473 + +0.6 5,103,493 + CA265_RS20625 0.10 -1.3 5,103,494 - CA265_RS20625 0.10 +1.2 5,103,497 - CA265_RS20625 0.11 +0.8 5,103,529 + CA265_RS20625 0.15 +0.6 5,103,529 + CA265_RS20625 0.15 +1.3 5,103,547 + CA265_RS20625 0.18 -0.9 5,103,547 + CA265_RS20625 0.18 +1.4 5,103,547 + CA265_RS20625 0.18 -0.8 5,103,550 - CA265_RS20625 0.18 +1.7 5,103,565 + CA265_RS20625 0.20 -0.5 5,103,565 + CA265_RS20625 0.20 +0.5 5,103,591 - CA265_RS20625 0.24 +1.0 5,103,607 + CA265_RS20625 0.26 +0.9 5,103,609 - CA265_RS20625 0.26 -0.3 5,103,627 - CA265_RS20625 0.29 +0.7 5,103,632 - CA265_RS20625 0.29 +0.6 5,103,652 + CA265_RS20625 0.32 +0.2 5,103,653 - CA265_RS20625 0.32 +0.3 5,103,655 - CA265_RS20625 0.33 +0.9 5,103,659 + CA265_RS20625 0.33 +0.4
Or see this region's nucleotide sequence