Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS18700

Experiment: R2A with Paraquat dichloride 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.003 mg/ml
4,650,168	-		CA265_RS18695	0.80	-3.1
4,650,200	+		CA265_RS18695	0.81	-0.2
4,650,202	+		CA265_RS18695	0.81	+1.0
4,650,279	+		CA265_RS18695	0.84	+1.0
4,650,279	+		CA265_RS18695	0.84	-0.2
4,650,280	-		CA265_RS18695	0.84	+0.3
4,650,284	-		CA265_RS18695	0.85	+0.1
4,650,354	-		CA265_RS18695	0.87	+0.3
4,650,355	+		CA265_RS18695	0.87	-0.1
4,650,355	+		CA265_RS18695	0.87	+0.1
4,650,355	+		CA265_RS18695	0.87	+0.1
4,650,398	+		CA265_RS18695	0.89	+0.7
4,650,398	+		CA265_RS18695	0.89	+0.5
4,650,399	-		CA265_RS18695	0.89	-0.4
4,650,399	-		CA265_RS18695	0.89	-0.8
4,650,417	-		CA265_RS18695	0.90	+2.5
4,650,417	-		CA265_RS18695	0.90	-2.6
4,650,428	-				+0.9
4,650,512	+				+0.2
4,650,599	+				+1.6
4,650,622	+				-1.1
4,650,671	+				-0.1
4,650,675	+				+0.6
4,650,675	+				+0.0
4,650,749	+				+0.0
4,650,749	+				+0.5
4,650,750	-				+0.3
4,650,761	-				+3.0
4,650,796	-				+3.0
4,650,804	+				-0.1
4,650,805	-				+1.0
4,650,805	-				-0.0
4,650,805	-				+0.9
4,650,805	-				-0.3
4,650,862	+				+0.5
4,650,903	-				-0.1
4,650,961	-				+0.3
4,650,961	-				-0.7
4,650,964	+				-1.5
4,650,964	+				+0.4
4,650,966	+				-1.0
4,650,967	-				+0.5
4,651,018	+				+0.6
4,651,018	+				+1.2
4,651,019	-				+0.5
4,651,019	-				-0.4
4,651,127	+				+0.2
4,651,149	+				-1.0
4,651,159	-				+1.2
4,651,254	+				-0.3
4,651,289	-				+0.4
4,651,310	+				-0.5
4,651,517	-		CA265_RS18700	0.17	-0.9
4,651,599	+		CA265_RS18700	0.21	+1.2
4,651,686	+		CA265_RS18700	0.25	-1.8
4,651,765	+		CA265_RS18700	0.29	+0.5
4,651,803	-		CA265_RS18700	0.30	+0.0
4,651,803	-		CA265_RS18700	0.30	-0.9
4,651,856	-		CA265_RS18700	0.33	-1.0
4,651,857	+		CA265_RS18700	0.33	+0.2
4,651,858	-		CA265_RS18700	0.33	-0.2
4,651,904	+		CA265_RS18700	0.35	+1.0
4,651,905	-		CA265_RS18700	0.35	-0.1
4,651,949	+		CA265_RS18700	0.37	-0.2
4,651,995	+		CA265_RS18700	0.39	+0.2
4,651,995	+		CA265_RS18700	0.39	-0.2
4,651,995	+		CA265_RS18700	0.39	-0.0
4,651,995	+		CA265_RS18700	0.39	+0.9
4,651,996	-		CA265_RS18700	0.39	+2.0
4,652,143	-		CA265_RS18700	0.46	-0.5
4,652,152	+		CA265_RS18700	0.46	+0.5
4,652,153	-		CA265_RS18700	0.46	+2.0
4,652,154	+		CA265_RS18700	0.46	+0.2
4,652,154	+		CA265_RS18700	0.46	-0.5
4,652,165	-		CA265_RS18700	0.47	-0.8
4,652,217	-		CA265_RS18700	0.49	+1.1
4,652,231	-		CA265_RS18700	0.50	+0.5
4,652,291	-		CA265_RS18700	0.53	+0.5
4,652,293	-		CA265_RS18700	0.53	-0.3
4,652,296	-		CA265_RS18700	0.53	+0.0
4,652,296	-		CA265_RS18700	0.53	+1.1
4,652,353	+		CA265_RS18700	0.55	+0.3
4,652,355	+		CA265_RS18700	0.55	-0.5
4,652,386	+		CA265_RS18700	0.57	+0.8
4,652,409	-		CA265_RS18700	0.58	-0.8
4,652,417	-		CA265_RS18700	0.58	+0.6
4,652,434	-		CA265_RS18700	0.59	+0.8
4,652,437	+		CA265_RS18700	0.59	+0.2
4,652,437	+		CA265_RS18700	0.59	+0.5
4,652,437	+		CA265_RS18700	0.59	-0.5
4,652,438	-		CA265_RS18700	0.59	-1.0
4,652,438	-		CA265_RS18700	0.59	-0.3
4,652,438	-		CA265_RS18700	0.59	+1.4
4,652,529	+		CA265_RS18700	0.63	+0.3
4,652,530	-		CA265_RS18700	0.63	+0.9
4,652,533	-		CA265_RS18700	0.64	-0.3
4,652,804	+		CA265_RS18700	0.76	-0.8
4,652,897	+		CA265_RS18700	0.80	+1.0
4,653,118	+				+0.3
4,653,119	-				+1.1
4,653,129	-				+1.5
4,653,140	-				-0.2
4,653,149	-				+1.4
4,653,201	-				+2.5
4,653,201	-				+0.5
4,653,217	-				+1.2
4,653,250	+				+1.5
4,653,250	+				-0.6
4,653,345	-				-0.2
4,653,354	-				-0.1
4,653,408	+				-2.5
4,653,494	+				-0.0
4,653,494	+				-0.4
4,653,495	-				-0.0
4,653,566	-				+0.8
4,653,566	-				-1.4
4,653,583	-				+1.5
4,653,583	-				+0.3
4,653,683	+		CA265_RS18705	0.15	+0.6
4,653,702	-		CA265_RS18705	0.16	-0.5
4,653,702	-		CA265_RS18705	0.16	+1.9
4,653,728	+		CA265_RS18705	0.18	-1.3
4,653,804	+				+0.6
4,653,805	-		CA265_RS18705	0.22	-0.1
4,653,807	-		CA265_RS18705	0.22	+0.4
4,653,852	-		CA265_RS18705	0.25	-0.2
4,653,866	+		CA265_RS18705	0.26	+0.2
4,653,945	+		CA265_RS18705	0.30	-0.4
4,653,946	-		CA265_RS18705	0.30	-1.4
4,653,950	-		CA265_RS18705	0.31	+0.7
4,653,966	+		CA265_RS18705	0.31	+0.3
4,653,970	-		CA265_RS18705	0.32	-0.8
4,653,970	-		CA265_RS18705	0.32	+0.1
4,653,985	-		CA265_RS18705	0.32	+1.3
4,653,991	-		CA265_RS18705	0.33	+1.1
4,654,026	+		CA265_RS18705	0.35	+0.6
4,654,027	-		CA265_RS18705	0.35	-0.0
4,654,074	-				+4.1
4,654,106	+		CA265_RS18705	0.39	+0.3
4,654,108	+		CA265_RS18705	0.39	-1.4
4,654,109	-		CA265_RS18705	0.40	-0.8
4,654,145	-		CA265_RS18705	0.42	-0.1
4,654,215	-		CA265_RS18705	0.46	+0.6
4,654,215	-		CA265_RS18705	0.46	-1.1
4,654,297	+		CA265_RS18705	0.50	-0.3
4,654,297	+		CA265_RS18705	0.50	+0.3