Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS16770

Experiment: R2A with Paraquat dichloride 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.003 mg/ml
4,206,293	-		CA265_RS16765	0.44	+0.2
4,206,375	+		CA265_RS16765	0.51	+2.7
4,206,376	-		CA265_RS16765	0.51	+0.7
4,206,410	-		CA265_RS16765	0.54	+1.2
4,206,416	-		CA265_RS16765	0.54	+0.1
4,206,416	-		CA265_RS16765	0.54	-0.3
4,206,438	-		CA265_RS16765	0.56	-0.4
4,206,459	+		CA265_RS16765	0.58	-0.2
4,206,460	-		CA265_RS16765	0.58	+1.6
4,206,460	-		CA265_RS16765	0.58	+0.1
4,206,506	-		CA265_RS16765	0.62	-0.1
4,206,512	+		CA265_RS16765	0.62	-0.5
4,206,536	+		CA265_RS16765	0.64	+0.1
4,206,569	+		CA265_RS16765	0.67	+1.2
4,206,570	-		CA265_RS16765	0.67	-0.8
4,206,728	+		CA265_RS16765	0.81	+0.9
4,206,790	+		CA265_RS16765	0.86	-0.2
4,206,790	+		CA265_RS16765	0.86	+1.1
4,206,798	-		CA265_RS16765	0.86	-0.1
4,206,815	-		CA265_RS16765	0.88	+1.5
4,206,942	+				+0.0
4,206,977	+				-0.4
4,207,018	-				-0.5
4,207,034	+				-0.3
4,207,035	-				-2.1
4,207,035	-				+0.7
4,207,151	+				-1.3
4,207,155	-				+1.2
4,207,155	-				+0.3
4,207,291	+				-1.7
4,207,292	-				-0.9
4,207,329	-				-0.8
4,207,511	+		CA265_RS16770	0.15	+0.4
4,207,512	-		CA265_RS16770	0.15	-0.0
4,207,514	-		CA265_RS16770	0.16	-0.1
4,207,514	-		CA265_RS16770	0.16	+0.1
4,207,658	+		CA265_RS16770	0.24	-1.3
4,207,658	+		CA265_RS16770	0.24	-0.7
4,207,659	-		CA265_RS16770	0.24	+0.0
4,207,668	+		CA265_RS16770	0.24	+0.8
4,207,668	+		CA265_RS16770	0.24	+0.9
4,207,850	-		CA265_RS16770	0.35	+0.1
4,207,868	-		CA265_RS16770	0.36	+0.8
4,207,990	-		CA265_RS16770	0.43	-1.8
4,208,089	-		CA265_RS16770	0.49	+0.6
4,208,208	-		CA265_RS16770	0.55	+0.3
4,208,208	-		CA265_RS16770	0.55	-1.0
4,208,222	-		CA265_RS16770	0.56	-0.5
4,208,274	-		CA265_RS16770	0.59	-0.5
4,208,275	+		CA265_RS16770	0.59	-1.4
4,208,302	+		CA265_RS16770	0.61	+0.4
4,208,302	+		CA265_RS16770	0.61	-0.8
4,208,302	+		CA265_RS16770	0.61	-0.2
4,208,302	+		CA265_RS16770	0.61	-1.2
4,208,303	-		CA265_RS16770	0.61	-1.1
4,208,303	-		CA265_RS16770	0.61	-0.7
4,208,322	+		CA265_RS16770	0.62	-1.6
4,208,507	+		CA265_RS16770	0.73	-0.4
4,208,561	-		CA265_RS16770	0.76	+0.0
4,208,589	+		CA265_RS16770	0.77	-0.6
4,208,593	+		CA265_RS16770	0.78	-1.0
4,208,597	+		CA265_RS16770	0.78	+1.9
4,208,598	-		CA265_RS16770	0.78	+0.4
4,208,624	+		CA265_RS16770	0.79	-0.9
4,208,626	+		CA265_RS16770	0.80	+0.0
4,208,656	+		CA265_RS16770	0.81	+1.6
4,208,656	+		CA265_RS16770	0.81	-1.1
4,208,662	+		CA265_RS16770	0.82	-1.9
4,208,663	-		CA265_RS16770	0.82	-0.1
4,208,711	-		CA265_RS16770	0.84	-0.8
4,208,749	-		CA265_RS16770	0.87	-0.0
4,208,849	-				-0.5
4,208,866	-				+0.7
4,208,929	+				-1.4
4,208,929	+				-0.3
4,208,930	-				+1.7
4,208,978	+				+1.2
4,208,992	-				-0.2
4,209,039	+				+1.5
4,209,040	-				-1.0
4,209,040	-				-1.3
4,209,040	-				+0.3
4,209,202	-		CA265_RS16775	0.33	-0.3
4,209,348	-		CA265_RS16775	0.56	+1.6
4,209,350	-		CA265_RS16775	0.57	-1.3
4,209,351	+		CA265_RS16775	0.57	+0.6
4,209,491	+		CA265_RS16775	0.79	+0.3
4,209,491	+		CA265_RS16775	0.79	-0.4
4,209,492	-		CA265_RS16775	0.79	+0.7
4,209,509	-		CA265_RS16775	0.82	+0.2
4,209,542	-		CA265_RS16775	0.87	-0.3
4,209,550	-		CA265_RS16775	0.88	-0.6
4,209,620	+				+0.7
4,209,623	-				-0.3
4,209,677	+				+1.9
4,209,678	-				-1.4
4,209,678	-				-1.0
4,209,722	+				-0.3
4,209,723	-				-0.8
4,209,724	+				-1.0
4,209,727	+				-0.7
4,209,730	+				+1.7
4,209,805	+				-1.6
4,209,808	+				+1.4
4,209,809	-				+0.3
4,209,913	-				-0.2
4,209,922	+				-0.3
4,209,954	+				-0.3