Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS06795

Experiment: R2A with Paraquat dichloride 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.003 mg/ml
1,681,200	-		CA265_RS06790	0.63	-0.9
1,681,200	-		CA265_RS06790	0.63	-0.0
1,681,216	+		CA265_RS06790	0.64	-0.9
1,681,216	+		CA265_RS06790	0.64	-3.8
1,681,218	+		CA265_RS06790	0.64	-1.4
1,681,219	-		CA265_RS06790	0.64	-0.3
1,681,219	-		CA265_RS06790	0.64	-0.0
1,681,229	-		CA265_RS06790	0.64	+1.2
1,681,296	+		CA265_RS06790	0.68	-0.1
1,681,305	+		CA265_RS06790	0.68	-1.0
1,681,417	-		CA265_RS06790	0.73	+0.1
1,681,457	-		CA265_RS06790	0.75	+0.6
1,681,457	-		CA265_RS06790	0.75	-0.6
1,681,522	-		CA265_RS06790	0.78	+1.7
1,681,537	-		CA265_RS06790	0.79	-0.3
1,681,537	-		CA265_RS06790	0.79	-0.4
1,681,574	+		CA265_RS06790	0.81	-1.7
1,681,612	+		CA265_RS06790	0.83	-2.7
1,681,632	-		CA265_RS06790	0.84	-0.1
1,681,690	-		CA265_RS06790	0.86	-0.5
1,681,743	-		CA265_RS06790	0.89	-0.4
1,681,743	-		CA265_RS06790	0.89	-1.7
1,681,743	-		CA265_RS06790	0.89	-1.1
1,681,763	+		CA265_RS06790	0.90	-0.4
1,681,795	-				-0.1
1,681,839	-				+0.5
1,681,882	-				-1.1
1,681,882	-				-1.3
1,681,968	-				-0.1
1,682,001	-				-1.2
1,682,031	-				-0.3
1,682,041	+				-1.5
1,682,043	+				-0.1
1,682,057	+				-2.8
1,682,145	-				+0.3
1,682,175	-				+0.7
1,682,175	-				-0.2
1,682,319	+				-0.0
1,682,320	-				+0.6
1,682,367	+				+1.5
1,682,367	+				+0.8
1,682,367	+				-0.4
1,682,371	+				+0.9
1,682,376	+				-1.9
1,682,413	+				-0.6
1,682,458	+				-0.5
1,682,483	+		CA265_RS06795	0.11	+0.4
1,682,483	+		CA265_RS06795	0.11	-0.2
1,682,484	-		CA265_RS06795	0.11	-0.7
1,682,498	-		CA265_RS06795	0.11	-0.3
1,682,531	+		CA265_RS06795	0.12	+0.3
1,682,532	-		CA265_RS06795	0.12	+2.8
1,682,582	-		CA265_RS06795	0.14	+0.3
1,682,633	+		CA265_RS06795	0.15	+0.2
1,682,634	-		CA265_RS06795	0.16	+0.0
1,682,639	-		CA265_RS06795	0.16	+0.1
1,682,726	-		CA265_RS06795	0.18	+0.5
1,682,750	+		CA265_RS06795	0.19	-0.1
1,682,761	+		CA265_RS06795	0.20	+0.2
1,682,787	+		CA265_RS06795	0.20	-0.7
1,682,812	+		CA265_RS06795	0.21	-0.5
1,682,886	-		CA265_RS06795	0.24	+0.3
1,682,891	+		CA265_RS06795	0.24	-0.2
1,682,891	+		CA265_RS06795	0.24	+4.6
1,682,991	+		CA265_RS06795	0.27	+0.2
1,682,999	-		CA265_RS06795	0.27	+0.3
1,683,122	+		CA265_RS06795	0.31	-0.2
1,683,133	-		CA265_RS06795	0.31	-1.2
1,683,133	-		CA265_RS06795	0.31	+0.0
1,683,139	+		CA265_RS06795	0.32	+1.4
1,683,139	+		CA265_RS06795	0.32	+0.2
1,683,167	+		CA265_RS06795	0.32	+0.1
1,683,250	+		CA265_RS06795	0.35	-0.4
1,683,251	-		CA265_RS06795	0.35	-0.7
1,683,261	+		CA265_RS06795	0.35	+0.1
1,683,267	+		CA265_RS06795	0.36	-0.4
1,683,332	-		CA265_RS06795	0.38	-0.2
1,683,340	+		CA265_RS06795	0.38	+0.6
1,683,340	+		CA265_RS06795	0.38	+0.1
1,683,351	-		CA265_RS06795	0.38	-0.4
1,683,359	-		CA265_RS06795	0.39	+0.7
1,683,410	-		CA265_RS06795	0.40	-1.4
1,683,461	+		CA265_RS06795	0.42	+0.0
1,683,471	-		CA265_RS06795	0.42	+0.5
1,683,471	-		CA265_RS06795	0.42	+0.2
1,683,476	-		CA265_RS06795	0.42	-2.4
1,683,548	+		CA265_RS06795	0.45	+1.0
1,683,549	-		CA265_RS06795	0.45	-0.0
1,683,557	-		CA265_RS06795	0.45	+0.0
1,683,557	-		CA265_RS06795	0.45	+0.3
1,683,560	+		CA265_RS06795	0.45	-0.5
1,683,575	+		CA265_RS06795	0.45	+0.2
1,683,602	+		CA265_RS06795	0.46	+0.6
1,683,705	-		CA265_RS06795	0.50	-0.3
1,683,761	+		CA265_RS06795	0.51	+0.4
1,683,875	-		CA265_RS06795	0.55	+0.2
1,683,896	+		CA265_RS06795	0.56	+0.4
1,683,897	-		CA265_RS06795	0.56	-0.1
1,683,909	-		CA265_RS06795	0.56	+0.6
1,683,921	+		CA265_RS06795	0.56	+0.1
1,683,974	+		CA265_RS06795	0.58	-0.8
1,683,984	+		CA265_RS06795	0.58	+0.6
1,683,985	-		CA265_RS06795	0.58	+0.0
1,684,048	+		CA265_RS06795	0.60	-0.4
1,684,102	+		CA265_RS06795	0.62	-0.5
1,684,127	+		CA265_RS06795	0.63	-0.1
1,684,153	-		CA265_RS06795	0.64	+0.3
1,684,174	+		CA265_RS06795	0.64	-0.3
1,684,174	+		CA265_RS06795	0.64	-1.0
1,684,174	+		CA265_RS06795	0.64	+0.2
1,684,184	+		CA265_RS06795	0.65	-0.3
1,684,185	-		CA265_RS06795	0.65	+0.1
1,684,214	-		CA265_RS06795	0.66	-1.1
1,684,355	+		CA265_RS06795	0.70	-0.1
1,684,356	-		CA265_RS06795	0.70	-0.1
1,684,420	+		CA265_RS06795	0.72	-0.8
1,684,421	-		CA265_RS06795	0.72	-0.2
1,684,421	-		CA265_RS06795	0.72	-0.4
1,684,475	+		CA265_RS06795	0.74	+0.0
1,684,481	+		CA265_RS06795	0.74	-0.2
1,684,546	-		CA265_RS06795	0.76	-0.2
1,684,548	-		CA265_RS06795	0.76	-0.5
1,684,607	+		CA265_RS06795	0.78	+0.1
1,684,609	+		CA265_RS06795	0.78	+0.4
1,684,662	+		CA265_RS06795	0.80	-0.2
1,684,724	+		CA265_RS06795	0.82	-1.2
1,684,760	-		CA265_RS06795	0.83	-0.3
1,684,760	-		CA265_RS06795	0.83	+0.8
1,684,773	+		CA265_RS06795	0.83	-0.8
1,684,834	-		CA265_RS06795	0.85	-1.7
1,684,836	-		CA265_RS06795	0.85	+0.8
1,684,873	-		CA265_RS06795	0.87	-0.6
1,684,892	+		CA265_RS06795	0.87	-0.5
1,684,925	-		CA265_RS06795	0.88	-2.1
1,684,994	+				+1.4
1,685,029	-				-0.6
1,685,068	+				-0.2
1,685,090	+				-1.0
1,685,090	+				-0.3
1,685,091	-				+1.3
1,685,114	+				-0.6
1,685,115	-				+0.5
1,685,174	+				-0.3
1,685,178	+				+0.1
1,685,178	+				+0.9
1,685,189	-				-0.3
1,685,208	+				+0.3
1,685,208	+				-2.2
1,685,209	-				-0.1
1,685,238	+				+0.3
1,685,286	-				+0.2
1,685,314	-				+0.7
1,685,357	-				+0.1
1,685,358	+				-0.4
1,685,456	-				-0.3
1,685,475	-				-0.3
1,685,475	-				-0.4
1,685,528	-		CA265_RS06800	0.10	-0.0
1,685,549	+		CA265_RS06800	0.11	+0.0
1,685,578	-		CA265_RS06800	0.13	+0.9
1,685,578	-		CA265_RS06800	0.13	+0.3
1,685,637	-		CA265_RS06800	0.15	+0.1
1,685,637	-		CA265_RS06800	0.15	+0.0
1,685,637	-		CA265_RS06800	0.15	+0.4
1,685,637	-		CA265_RS06800	0.15	-0.2
1,685,644	+		CA265_RS06800	0.16	+0.8
1,685,737	-		CA265_RS06800	0.20	-0.2
1,685,750	+		CA265_RS06800	0.21	+0.9
1,685,772	-		CA265_RS06800	0.22	-0.1
1,685,772	-		CA265_RS06800	0.22	-0.0
1,685,800	+		CA265_RS06800	0.24	+0.1
1,685,857	-		CA265_RS06800	0.26	-0.2
1,685,858	+		CA265_RS06800	0.27	-1.0
1,685,858	+		CA265_RS06800	0.27	+0.2
1,685,869	-		CA265_RS06800	0.27	+0.4
1,685,878	+				+0.7
1,685,959	+		CA265_RS06800	0.32	+0.2
1,685,983	+		CA265_RS06800	0.33	-2.2
1,686,017	+		CA265_RS06800	0.34	+0.9
1,686,042	+		CA265_RS06800	0.36	-0.1
1,686,085	+		CA265_RS06800	0.38	+0.2
1,686,236	-		CA265_RS06800	0.45	-0.2
1,686,238	-		CA265_RS06800	0.46	+0.3