Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS06350

Experiment: R2A with Paraquat dichloride 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.003 mg/ml
1,557,420	-		CA265_RS06340	0.66	-0.1
1,557,421	+		CA265_RS06340	0.67	-0.3
1,557,421	+		CA265_RS06340	0.67	-0.2
1,557,453	+		CA265_RS06340	0.70	+1.3
1,557,476	+		CA265_RS06340	0.72	-0.5
1,557,481	-		CA265_RS06340	0.73	-0.5
1,557,481	-		CA265_RS06340	0.73	-0.1
1,557,528	+		CA265_RS06340	0.78	-0.9
1,557,556	+		CA265_RS06340	0.81	+1.5
1,557,613	-		CA265_RS06340	0.87	-0.3
1,557,651	+				-0.2
1,557,651	+				-1.2
1,557,652	-				+0.7
1,557,652	-				+0.8
1,557,655	-				-0.9
1,557,668	-				-0.2
1,557,833	+				+0.2
1,557,833	+				-0.3
1,557,861	+		CA265_RS06345	0.13	+0.5
1,557,908	-		CA265_RS06345	0.20	+0.7
1,557,974	-		CA265_RS06345	0.30	+0.5
1,557,982	-		CA265_RS06345	0.31	-0.0
1,557,995	+		CA265_RS06345	0.33	-1.3
1,558,036	-		CA265_RS06345	0.40	-0.6
1,558,039	-		CA265_RS06345	0.40	+1.4
1,558,047	+		CA265_RS06345	0.41	-0.4
1,558,053	+		CA265_RS06345	0.42	+0.9
1,558,084	+		CA265_RS06345	0.47	-0.4
1,558,086	+		CA265_RS06345	0.47	-0.8
1,558,087	-		CA265_RS06345	0.47	+0.8
1,558,091	-		CA265_RS06345	0.48	+0.4
1,558,105	+		CA265_RS06345	0.50	-0.7
1,558,111	-		CA265_RS06345	0.51	+0.2
1,558,113	+		CA265_RS06345	0.51	-0.6
1,558,171	+				+1.3
1,558,172	-		CA265_RS06345	0.60	+1.0
1,558,208	-		CA265_RS06345	0.66	+0.7
1,558,208	-		CA265_RS06345	0.66	+0.0
1,558,252	-		CA265_RS06345	0.72	+0.9
1,558,280	+		CA265_RS06345	0.77	-0.3
1,558,282	+		CA265_RS06345	0.77	+0.3
1,558,350	+		CA265_RS06345	0.87	-0.7
1,558,362	+		CA265_RS06345	0.89	-0.4
1,558,370	+				-1.3
1,558,374	+				-2.2
1,558,430	+				+0.3
1,558,626	+		CA265_RS06350	0.29	-0.7
1,558,640	+		CA265_RS06350	0.31	+0.1
1,558,674	-		CA265_RS06350	0.35	-1.8
1,558,695	+		CA265_RS06350	0.38	+0.7
1,558,704	-		CA265_RS06350	0.39	-0.5
1,558,784	+		CA265_RS06350	0.49	-1.2
1,558,794	+		CA265_RS06350	0.50	-0.0
1,558,857	+		CA265_RS06350	0.58	+0.1
1,558,858	-		CA265_RS06350	0.59	+0.4
1,558,858	-		CA265_RS06350	0.59	-0.1
1,558,947	-		CA265_RS06350	0.70	-0.7
1,558,950	+		CA265_RS06350	0.70	-0.3
1,558,950	+		CA265_RS06350	0.70	-2.6
1,558,950	+		CA265_RS06350	0.70	-0.7
1,558,970	+		CA265_RS06350	0.73	-0.0
1,558,971	-		CA265_RS06350	0.73	+0.3
1,559,026	-		CA265_RS06350	0.80	-0.6
1,559,093	+		CA265_RS06350	0.88	-0.5
1,559,093	+		CA265_RS06350	0.88	-1.0
1,559,094	-		CA265_RS06350	0.88	-0.2
1,559,176	+				+1.3
1,559,177	-				-0.2
1,559,256	-		CA265_RS06355	0.12	-0.5
1,559,256	-		CA265_RS06355	0.12	-0.3
1,559,275	-		CA265_RS06355	0.15	+0.2
1,559,275	-		CA265_RS06355	0.15	-0.2
1,559,275	-		CA265_RS06355	0.15	-1.2
1,559,305	+		CA265_RS06355	0.19	-0.3
1,559,356	-		CA265_RS06355	0.27	-1.0
1,559,359	+		CA265_RS06355	0.28	+0.2
1,559,379	-		CA265_RS06355	0.31	+1.3
1,559,419	-		CA265_RS06355	0.37	+0.0
1,559,422	+		CA265_RS06355	0.37	+0.2
1,559,423	-		CA265_RS06355	0.37	+0.5
1,559,423	-		CA265_RS06355	0.37	-0.6
1,559,423	-		CA265_RS06355	0.37	+0.2
1,559,424	+		CA265_RS06355	0.37	+0.3
1,559,458	+		CA265_RS06355	0.43	+0.3
1,559,459	-		CA265_RS06355	0.43	+0.3
1,559,492	+		CA265_RS06355	0.48	-0.5
1,559,544	+		CA265_RS06355	0.56	+0.5
1,559,545	-		CA265_RS06355	0.56	-0.3
1,559,559	-		CA265_RS06355	0.58	-1.7
1,559,559	-		CA265_RS06355	0.58	-0.3
1,559,565	-		CA265_RS06355	0.59	-1.1
1,559,737	+		CA265_RS06355	0.85	-0.7
1,559,738	-		CA265_RS06355	0.85	-0.4
1,559,824	-				+0.2
1,559,865	+				-0.1
1,559,866	-				+0.6
1,559,872	-				-0.1
1,559,913	-				-0.3
1,559,937	+				+0.6
1,559,956	-				+0.9
1,559,960	+				-1.6
1,559,961	-				-0.0
1,559,982	+				+0.2
1,560,020	+				+0.7
1,560,021	-				+0.4
1,560,041	+				-0.5
1,560,041	+				-1.8
1,560,041	+				-1.1
1,560,042	-				+1.0
1,560,086	-				-1.1
1,560,116	+				+0.2
1,560,116	+				-0.1
1,560,116	+				+0.0
1,560,117	-				+0.9
1,560,120	+				+0.9
1,560,121	-				+0.3
1,560,148	+		CA265_RS06360	0.11	-0.2