Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03975

Experiment: R2A with Paraquat dichloride 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS03965 and CA265_RS03970 are separated by 72 nucleotidesCA265_RS03970 and CA265_RS03975 are separated by 30 nucleotidesCA265_RS03975 and CA265_RS03980 are separated by 20 nucleotides CA265_RS03965: CA265_RS03965 - hypothetical protein, at 945,485 to 947,026 _RS03965 CA265_RS03970: CA265_RS03970 - hypothetical protein, at 947,099 to 947,842 _RS03970 CA265_RS03975: CA265_RS03975 - hypothetical protein, at 947,873 to 949,546 _RS03975 CA265_RS03980: CA265_RS03980 - hypothetical protein, at 949,567 to 951,315 _RS03980 Position (kb) 947 948 949 950Strain fitness (log2 ratio) -2 -1 0 1 2 3at 946.918 kb on + strandat 946.970 kb on - strandat 946.998 kb on - strandat 947.025 kb on - strandat 947.027 kb on + strandat 947.079 kb on - strandat 947.079 kb on - strandat 947.091 kb on - strandat 947.093 kb on - strandat 947.093 kb on - strandat 947.093 kb on - strandat 947.113 kb on + strandat 947.140 kb on + strandat 947.164 kb on + strandat 947.171 kb on + strandat 947.205 kb on - strand, within CA265_RS03970at 947.217 kb on + strand, within CA265_RS03970at 947.218 kb on - strand, within CA265_RS03970at 947.225 kb on + strand, within CA265_RS03970at 947.225 kb on + strand, within CA265_RS03970at 947.225 kb on + strand, within CA265_RS03970at 947.225 kb on + strand, within CA265_RS03970at 947.227 kb on + strand, within CA265_RS03970at 947.273 kb on - strand, within CA265_RS03970at 947.277 kb on + strand, within CA265_RS03970at 947.345 kb on + strand, within CA265_RS03970at 947.356 kb on + strand, within CA265_RS03970at 947.371 kb on - strand, within CA265_RS03970at 947.441 kb on - strand, within CA265_RS03970at 947.442 kb on + strand, within CA265_RS03970at 947.511 kb on - strand, within CA265_RS03970at 947.543 kb on + strand, within CA265_RS03970at 947.543 kb on + strand, within CA265_RS03970at 947.590 kb on - strand, within CA265_RS03970at 947.595 kb on - strand, within CA265_RS03970at 947.661 kb on - strand, within CA265_RS03970at 947.725 kb on - strand, within CA265_RS03970at 947.725 kb on - strand, within CA265_RS03970at 947.725 kb on - strand, within CA265_RS03970at 947.790 kb on - strandat 947.841 kb on - strandat 947.841 kb on - strandat 947.849 kb on - strandat 948.010 kb on + strandat 948.095 kb on - strand, within CA265_RS03975at 948.113 kb on + strand, within CA265_RS03975at 948.113 kb on + strand, within CA265_RS03975at 948.143 kb on - strand, within CA265_RS03975at 948.187 kb on + strand, within CA265_RS03975at 948.205 kb on + strand, within CA265_RS03975at 948.205 kb on + strand, within CA265_RS03975at 948.267 kb on + strand, within CA265_RS03975at 948.267 kb on + strand, within CA265_RS03975at 948.274 kb on - strand, within CA265_RS03975at 948.281 kb on - strand, within CA265_RS03975at 948.292 kb on - strand, within CA265_RS03975at 948.333 kb on - strand, within CA265_RS03975at 948.338 kb on - strand, within CA265_RS03975at 948.340 kb on - strand, within CA265_RS03975at 948.363 kb on - strand, within CA265_RS03975at 948.369 kb on + strand, within CA265_RS03975at 948.421 kb on - strand, within CA265_RS03975at 948.438 kb on + strand, within CA265_RS03975at 948.455 kb on + strand, within CA265_RS03975at 948.456 kb on - strand, within CA265_RS03975at 948.458 kb on - strand, within CA265_RS03975at 948.506 kb on + strand, within CA265_RS03975at 948.520 kb on + strand, within CA265_RS03975at 948.539 kb on - strand, within CA265_RS03975at 948.568 kb on + strand, within CA265_RS03975at 948.590 kb on - strand, within CA265_RS03975at 948.613 kb on - strand, within CA265_RS03975at 948.652 kb on + strand, within CA265_RS03975at 948.673 kb on + strand, within CA265_RS03975at 948.674 kb on - strand, within CA265_RS03975at 948.674 kb on - strand, within CA265_RS03975at 948.794 kb on - strand, within CA265_RS03975at 948.794 kb on - strand, within CA265_RS03975at 948.799 kb on + strand, within CA265_RS03975at 948.799 kb on + strand, within CA265_RS03975at 948.800 kb on - strand, within CA265_RS03975at 948.803 kb on - strand, within CA265_RS03975at 948.818 kb on + strand, within CA265_RS03975at 948.889 kb on + strand, within CA265_RS03975at 948.898 kb on + strand, within CA265_RS03975at 948.899 kb on - strand, within CA265_RS03975at 948.899 kb on - strand, within CA265_RS03975at 948.920 kb on + strand, within CA265_RS03975at 948.970 kb on - strand, within CA265_RS03975at 948.976 kb on + strand, within CA265_RS03975at 949.035 kb on + strand, within CA265_RS03975at 949.036 kb on - strand, within CA265_RS03975at 949.036 kb on - strandat 949.036 kb on - strand, within CA265_RS03975at 949.066 kb on - strand, within CA265_RS03975at 949.066 kb on - strand, within CA265_RS03975at 949.077 kb on + strand, within CA265_RS03975at 949.117 kb on + strand, within CA265_RS03975at 949.117 kb on + strand, within CA265_RS03975at 949.142 kb on - strand, within CA265_RS03975at 949.142 kb on - strand, within CA265_RS03975at 949.232 kb on - strand, within CA265_RS03975at 949.241 kb on - strand, within CA265_RS03975at 949.241 kb on - strand, within CA265_RS03975at 949.273 kb on - strand, within CA265_RS03975at 949.273 kb on - strand, within CA265_RS03975at 949.277 kb on - strand, within CA265_RS03975at 949.294 kb on + strand, within CA265_RS03975at 949.365 kb on + strand, within CA265_RS03975at 949.400 kb on - strandat 949.400 kb on - strandat 949.423 kb on + strandat 949.486 kb on + strandat 949.510 kb on - strandat 949.566 kb on - strandat 949.566 kb on - strandat 949.593 kb on - strandat 949.596 kb on + strandat 949.638 kb on + strandat 949.645 kb on - strandat 949.738 kb on + strandat 949.739 kb on - strandat 949.739 kb on - strandat 949.739 kb on - strandat 949.803 kb on + strand, within CA265_RS03980at 949.820 kb on + strand, within CA265_RS03980at 949.821 kb on - strand, within CA265_RS03980at 949.825 kb on - strand, within CA265_RS03980at 949.884 kb on + strand, within CA265_RS03980at 949.884 kb on + strand, within CA265_RS03980at 949.887 kb on + strand, within CA265_RS03980at 949.887 kb on + strand, within CA265_RS03980at 949.926 kb on + strand, within CA265_RS03980at 950.111 kb on + strand, within CA265_RS03980at 950.120 kb on + strand, within CA265_RS03980at 950.121 kb on - strand, within CA265_RS03980at 950.130 kb on + strand, within CA265_RS03980at 950.213 kb on - strand, within CA265_RS03980at 950.242 kb on + strand, within CA265_RS03980at 950.242 kb on + strand, within CA265_RS03980at 950.243 kb on - strand, within CA265_RS03980at 950.268 kb on - strand, within CA265_RS03980at 950.319 kb on + strand, within CA265_RS03980at 950.319 kb on + strand, within CA265_RS03980at 950.359 kb on - strand, within CA265_RS03980at 950.386 kb on - strand, within CA265_RS03980at 950.389 kb on + strand, within CA265_RS03980at 950.389 kb on + strand, within CA265_RS03980at 950.401 kb on + strand, within CA265_RS03980at 950.492 kb on + strand, within CA265_RS03980at 950.493 kb on - strand, within CA265_RS03980at 950.529 kb on + strand, within CA265_RS03980at 950.530 kb on - strand, within CA265_RS03980

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.003 mg/ml
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946,918 + +0.8
946,970 - +0.2
946,998 - -0.5
947,025 - -0.3
947,027 + -1.2
947,079 - -0.1
947,079 - +0.1
947,091 - +0.0
947,093 - -0.2
947,093 - +0.3
947,093 - +0.3
947,113 + -1.1
947,140 + -0.2
947,164 + -0.6
947,171 + -1.3
947,205 - CA265_RS03970 0.14 +0.1
947,217 + CA265_RS03970 0.16 -0.6
947,218 - CA265_RS03970 0.16 +0.3
947,225 + CA265_RS03970 0.17 +0.4
947,225 + CA265_RS03970 0.17 -0.4
947,225 + CA265_RS03970 0.17 -0.5
947,225 + CA265_RS03970 0.17 +0.6
947,227 + CA265_RS03970 0.17 -1.2
947,273 - CA265_RS03970 0.23 +0.2
947,277 + CA265_RS03970 0.24 -0.6
947,345 + CA265_RS03970 0.33 -0.2
947,356 + CA265_RS03970 0.35 +0.4
947,371 - CA265_RS03970 0.37 -0.1
947,441 - CA265_RS03970 0.46 -0.0
947,442 + CA265_RS03970 0.46 -1.4
947,511 - CA265_RS03970 0.55 +1.9
947,543 + CA265_RS03970 0.60 -1.6
947,543 + CA265_RS03970 0.60 -1.9
947,590 - CA265_RS03970 0.66 -0.4
947,595 - CA265_RS03970 0.67 -0.1
947,661 - CA265_RS03970 0.76 -1.3
947,725 - CA265_RS03970 0.84 +0.5
947,725 - CA265_RS03970 0.84 -0.0
947,725 - CA265_RS03970 0.84 -1.3
947,790 - +0.1
947,841 - +0.0
947,841 - -0.1
947,849 - +0.3
948,010 + -0.8
948,095 - CA265_RS03975 0.13 +0.6
948,113 + CA265_RS03975 0.14 +0.1
948,113 + CA265_RS03975 0.14 -0.7
948,143 - CA265_RS03975 0.16 -0.3
948,187 + CA265_RS03975 0.19 -0.4
948,205 + CA265_RS03975 0.20 +0.6
948,205 + CA265_RS03975 0.20 +0.6
948,267 + CA265_RS03975 0.24 -0.9
948,267 + CA265_RS03975 0.24 -0.8
948,274 - CA265_RS03975 0.24 +0.2
948,281 - CA265_RS03975 0.24 +0.8
948,292 - CA265_RS03975 0.25 -0.3
948,333 - CA265_RS03975 0.27 -0.7
948,338 - CA265_RS03975 0.28 +1.1
948,340 - CA265_RS03975 0.28 +1.7
948,363 - CA265_RS03975 0.29 +0.1
948,369 + CA265_RS03975 0.30 -2.1
948,421 - CA265_RS03975 0.33 -0.6
948,438 + CA265_RS03975 0.34 -2.3
948,455 + CA265_RS03975 0.35 -1.2
948,456 - CA265_RS03975 0.35 -1.6
948,458 - CA265_RS03975 0.35 -0.6
948,506 + CA265_RS03975 0.38 -2.3
948,520 + CA265_RS03975 0.39 -0.7
948,539 - CA265_RS03975 0.40 +0.1
948,568 + CA265_RS03975 0.42 -1.1
948,590 - CA265_RS03975 0.43 -0.7
948,613 - CA265_RS03975 0.44 +0.1
948,652 + CA265_RS03975 0.47 -2.3
948,673 + CA265_RS03975 0.48 -0.2
948,674 - CA265_RS03975 0.48 -0.2
948,674 - CA265_RS03975 0.48 -0.5
948,794 - CA265_RS03975 0.55 -1.1
948,794 - CA265_RS03975 0.55 -0.5
948,799 + CA265_RS03975 0.55 +0.2
948,799 + CA265_RS03975 0.55 +1.4
948,800 - CA265_RS03975 0.55 +0.3
948,803 - CA265_RS03975 0.56 -0.0
948,818 + CA265_RS03975 0.56 -1.5
948,889 + CA265_RS03975 0.61 -0.9
948,898 + CA265_RS03975 0.61 -1.4
948,899 - CA265_RS03975 0.61 +0.1
948,899 - CA265_RS03975 0.61 +0.6
948,920 + CA265_RS03975 0.63 -0.8
948,970 - CA265_RS03975 0.66 -0.9
948,976 + CA265_RS03975 0.66 -1.0
949,035 + CA265_RS03975 0.69 -1.4
949,036 - CA265_RS03975 0.69 -0.7
949,036 - +2.4
949,036 - CA265_RS03975 0.69 -0.7
949,066 - CA265_RS03975 0.71 -1.7
949,066 - CA265_RS03975 0.71 +0.1
949,077 + CA265_RS03975 0.72 -0.5
949,117 + CA265_RS03975 0.74 -1.3
949,117 + CA265_RS03975 0.74 -2.4
949,142 - CA265_RS03975 0.76 -0.3
949,142 - CA265_RS03975 0.76 -0.2
949,232 - CA265_RS03975 0.81 +0.1
949,241 - CA265_RS03975 0.82 -0.4
949,241 - CA265_RS03975 0.82 +1.2
949,273 - CA265_RS03975 0.84 -0.8
949,273 - CA265_RS03975 0.84 +0.5
949,277 - CA265_RS03975 0.84 -1.1
949,294 + CA265_RS03975 0.85 -1.7
949,365 + CA265_RS03975 0.89 -2.3
949,400 - -0.8
949,400 - -1.2
949,423 + -2.2
949,486 + -1.2
949,510 - -1.0
949,566 - +0.3
949,566 - -1.3
949,593 - +0.4
949,596 + -0.1
949,638 + +0.2
949,645 - -0.5
949,738 + -0.6
949,739 - +0.0
949,739 - -0.1
949,739 - -0.1
949,803 + CA265_RS03980 0.13 -0.4
949,820 + CA265_RS03980 0.14 -1.9
949,821 - CA265_RS03980 0.15 +0.2
949,825 - CA265_RS03980 0.15 +0.6
949,884 + CA265_RS03980 0.18 -0.9
949,884 + CA265_RS03980 0.18 -1.7
949,887 + CA265_RS03980 0.18 +1.2
949,887 + CA265_RS03980 0.18 -0.9
949,926 + CA265_RS03980 0.21 -0.9
950,111 + CA265_RS03980 0.31 +0.1
950,120 + CA265_RS03980 0.32 -1.4
950,121 - CA265_RS03980 0.32 -0.3
950,130 + CA265_RS03980 0.32 +0.9
950,213 - CA265_RS03980 0.37 +0.4
950,242 + CA265_RS03980 0.39 -1.1
950,242 + CA265_RS03980 0.39 -0.1
950,243 - CA265_RS03980 0.39 +0.5
950,268 - CA265_RS03980 0.40 +1.1
950,319 + CA265_RS03980 0.43 +0.1
950,319 + CA265_RS03980 0.43 -0.5
950,359 - CA265_RS03980 0.45 -1.7
950,386 - CA265_RS03980 0.47 +0.2
950,389 + CA265_RS03980 0.47 -0.7
950,389 + CA265_RS03980 0.47 -1.3
950,401 + CA265_RS03980 0.48 -1.1
950,492 + CA265_RS03980 0.53 +1.7
950,493 - CA265_RS03980 0.53 +0.1
950,529 + CA265_RS03980 0.55 -0.5
950,530 - CA265_RS03980 0.55 +3.4

Or see this region's nucleotide sequence