Experiment: R2A with Paraquat dichloride 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00990 and CA265_RS00995 are separated by 579 nucleotides CA265_RS00995 and CA265_RS01000 are separated by 92 nucleotides CA265_RS01000 and CA265_RS01005 are separated by 46 nucleotides
CA265_RS00990: CA265_RS00990 - acyl-CoA desaturase, at 251,565 to 252,293
_RS00990
CA265_RS00995: CA265_RS00995 - hypothetical protein, at 252,873 to 253,202
_RS00995
CA265_RS01000: CA265_RS01000 - hypothetical protein, at 253,295 to 254,092
_RS01000
CA265_RS01005: CA265_RS01005 - SAM-dependent methyltransferase, at 254,139 to 255,170
_RS01005
Position (kb) 252
253
254 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 251.875 kb on + strand, within CA265_RS00990 at 251.975 kb on + strand, within CA265_RS00990 at 252.003 kb on + strand, within CA265_RS00990 at 252.004 kb on - strand, within CA265_RS00990 at 252.015 kb on + strand, within CA265_RS00990 at 252.030 kb on - strand, within CA265_RS00990 at 252.087 kb on + strand, within CA265_RS00990 at 252.088 kb on - strand, within CA265_RS00990 at 252.120 kb on - strand, within CA265_RS00990 at 252.254 kb on - strand at 252.272 kb on + strand at 252.276 kb on - strand at 252.311 kb on - strand at 252.311 kb on - strand at 252.364 kb on + strand at 252.364 kb on + strand at 252.365 kb on - strand at 252.366 kb on + strand at 252.463 kb on + strand at 252.505 kb on - strand at 252.644 kb on + strand at 252.655 kb on + strand at 252.692 kb on + strand at 252.755 kb on - strand at 252.834 kb on + strand at 252.836 kb on - strand at 252.926 kb on + strand, within CA265_RS00995 at 252.931 kb on + strand, within CA265_RS00995 at 253.021 kb on - strand, within CA265_RS00995 at 253.025 kb on + strand, within CA265_RS00995 at 253.025 kb on + strand, within CA265_RS00995 at 253.073 kb on + strand, within CA265_RS00995 at 253.088 kb on + strand, within CA265_RS00995 at 253.115 kb on + strand, within CA265_RS00995 at 253.120 kb on + strand, within CA265_RS00995 at 253.121 kb on - strand, within CA265_RS00995 at 253.134 kb on + strand, within CA265_RS00995 at 253.160 kb on - strand, within CA265_RS00995 at 253.186 kb on + strand at 253.201 kb on - strand at 253.242 kb on + strand at 253.245 kb on + strand at 253.274 kb on - strand at 253.314 kb on + strand at 253.318 kb on + strand at 253.318 kb on + strand at 253.322 kb on - strand at 253.324 kb on - strand at 253.358 kb on - strand at 253.442 kb on - strand, within CA265_RS01000 at 253.510 kb on - strand, within CA265_RS01000 at 253.553 kb on - strand, within CA265_RS01000 at 253.715 kb on - strand, within CA265_RS01000 at 253.731 kb on - strand, within CA265_RS01000 at 253.753 kb on - strand, within CA265_RS01000 at 253.825 kb on + strand, within CA265_RS01000 at 253.826 kb on - strand, within CA265_RS01000 at 253.845 kb on + strand, within CA265_RS01000 at 254.032 kb on - strand at 254.045 kb on + strand at 254.130 kb on + strand at 254.130 kb on + strand at 254.131 kb on - strand at 254.136 kb on - strand at 254.145 kb on + strand at 254.146 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.003 mg/ml remove 251,875 + CA265_RS00990 0.43 +2.5 251,975 + CA265_RS00990 0.56 +0.7 252,003 + CA265_RS00990 0.60 -0.1 252,004 - CA265_RS00990 0.60 -1.3 252,015 + CA265_RS00990 0.62 -1.8 252,030 - CA265_RS00990 0.64 -1.8 252,087 + CA265_RS00990 0.72 -1.7 252,088 - CA265_RS00990 0.72 -1.5 252,120 - CA265_RS00990 0.76 -2.5 252,254 - -1.6 252,272 + -2.0 252,276 - -1.1 252,311 - -3.6 252,311 - -2.7 252,364 + +0.7 252,364 + -0.5 252,365 - -3.4 252,366 + +0.5 252,463 + +0.3 252,505 - -0.1 252,644 + -0.2 252,655 + +0.3 252,692 + +1.5 252,755 - -1.6 252,834 + -0.3 252,836 - -1.1 252,926 + CA265_RS00995 0.16 +1.2 252,931 + CA265_RS00995 0.18 +0.3 253,021 - CA265_RS00995 0.45 -0.6 253,025 + CA265_RS00995 0.46 +1.0 253,025 + CA265_RS00995 0.46 +0.8 253,073 + CA265_RS00995 0.61 +1.3 253,088 + CA265_RS00995 0.65 +2.5 253,115 + CA265_RS00995 0.73 +1.0 253,120 + CA265_RS00995 0.75 +0.7 253,121 - CA265_RS00995 0.75 +0.2 253,134 + CA265_RS00995 0.79 +1.7 253,160 - CA265_RS00995 0.87 -1.1 253,186 + +0.8 253,201 - -0.6 253,242 + +2.4 253,245 + +2.6 253,274 - -0.1 253,314 + +0.4 253,318 + +0.8 253,318 + +1.2 253,322 - -0.1 253,324 - -1.0 253,358 - -0.0 253,442 - CA265_RS01000 0.18 -0.8 253,510 - CA265_RS01000 0.27 +0.2 253,553 - CA265_RS01000 0.32 -0.5 253,715 - CA265_RS01000 0.53 -0.2 253,731 - CA265_RS01000 0.55 -0.8 253,753 - CA265_RS01000 0.57 -0.9 253,825 + CA265_RS01000 0.66 +2.8 253,826 - CA265_RS01000 0.67 -0.8 253,845 + CA265_RS01000 0.69 +2.5 254,032 - -0.6 254,045 + +3.7 254,130 + +1.5 254,130 + +0.6 254,131 - +0.1 254,136 - +0.5 254,145 + +0.9 254,146 - -1.1
Or see this region's nucleotide sequence