Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35010

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS35005 and BPHYT_RS35010 are separated by 6 nucleotidesBPHYT_RS35010 and BPHYT_RS35015 are separated by 221 nucleotidesBPHYT_RS35015 and BPHYT_RS35020 are separated by 177 nucleotides BPHYT_RS35005: BPHYT_RS35005 - molecular chaperone DnaJ, at 3,456,675 to 3,458,384 _RS35005 BPHYT_RS35010: BPHYT_RS35010 - 2-alkenal reductase, at 3,458,391 to 3,460,100 _RS35010 BPHYT_RS35015: BPHYT_RS35015 - GNAT family acetyltransferase, at 3,460,322 to 3,460,783 _RS35015 BPHYT_RS35020: BPHYT_RS35020 - hypothetical protein, at 3,460,961 to 3,461,380 _RS35020 Position (kb) 3458 3459 3460 3461Strain fitness (log2 ratio) -3 -2 -1 0 1at 3457.615 kb on + strand, within BPHYT_RS35005at 3457.635 kb on + strand, within BPHYT_RS35005at 3457.756 kb on + strand, within BPHYT_RS35005at 3457.959 kb on + strand, within BPHYT_RS35005at 3458.136 kb on + strand, within BPHYT_RS35005at 3458.231 kb on - strandat 3458.311 kb on - strandat 3458.378 kb on + strandat 3458.502 kb on - strandat 3458.927 kb on + strand, within BPHYT_RS35010at 3459.009 kb on - strand, within BPHYT_RS35010at 3459.887 kb on - strand, within BPHYT_RS35010at 3459.924 kb on - strand, within BPHYT_RS35010at 3459.995 kb on + strandat 3460.062 kb on - strandat 3460.062 kb on - strandat 3460.062 kb on - strandat 3460.103 kb on - strandat 3460.103 kb on - strandat 3460.338 kb on + strandat 3460.452 kb on + strand, within BPHYT_RS35015at 3460.452 kb on + strand, within BPHYT_RS35015at 3460.509 kb on + strand, within BPHYT_RS35015at 3460.710 kb on + strand, within BPHYT_RS35015at 3461.065 kb on - strand, within BPHYT_RS35020

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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3,457,615 + BPHYT_RS35005 0.55 -1.3
3,457,635 + BPHYT_RS35005 0.56 -1.9
3,457,756 + BPHYT_RS35005 0.63 +0.7
3,457,959 + BPHYT_RS35005 0.75 -0.8
3,458,136 + BPHYT_RS35005 0.85 -1.7
3,458,231 - -1.8
3,458,311 - -2.2
3,458,378 + -0.3
3,458,502 - -0.4
3,458,927 + BPHYT_RS35010 0.31 -0.4
3,459,009 - BPHYT_RS35010 0.36 -1.8
3,459,887 - BPHYT_RS35010 0.87 -3.3
3,459,924 - BPHYT_RS35010 0.90 -1.7
3,459,995 + -1.4
3,460,062 - -0.7
3,460,062 - -2.4
3,460,062 - -1.6
3,460,103 - +0.1
3,460,103 - +1.2
3,460,338 + -1.0
3,460,452 + BPHYT_RS35015 0.28 -0.2
3,460,452 + BPHYT_RS35015 0.28 +0.4
3,460,509 + BPHYT_RS35015 0.40 +0.4
3,460,710 + BPHYT_RS35015 0.84 -0.2
3,461,065 - BPHYT_RS35020 0.25 +0.2

Or see this region's nucleotide sequence