Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35010
Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Bacitracin 0.25 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,457,615 | + | BPHYT_RS35005 | 0.55 | -1.3 | |
3,457,635 | + | BPHYT_RS35005 | 0.56 | -1.9 | |
3,457,756 | + | BPHYT_RS35005 | 0.63 | +0.7 | |
3,457,959 | + | BPHYT_RS35005 | 0.75 | -0.8 | |
3,458,136 | + | BPHYT_RS35005 | 0.85 | -1.7 | |
3,458,231 | - | -1.8 | |||
3,458,311 | - | -2.2 | |||
3,458,378 | + | -0.3 | |||
3,458,502 | - | -0.4 | |||
3,458,927 | + | BPHYT_RS35010 | 0.31 | -0.4 | |
3,459,009 | - | BPHYT_RS35010 | 0.36 | -1.8 | |
3,459,887 | - | BPHYT_RS35010 | 0.87 | -3.3 | |
3,459,924 | - | BPHYT_RS35010 | 0.90 | -1.7 | |
3,459,995 | + | -1.4 | |||
3,460,062 | - | -0.7 | |||
3,460,062 | - | -2.4 | |||
3,460,062 | - | -1.6 | |||
3,460,103 | - | +0.1 | |||
3,460,103 | - | +1.2 | |||
3,460,338 | + | -1.0 | |||
3,460,452 | + | BPHYT_RS35015 | 0.28 | -0.2 | |
3,460,452 | + | BPHYT_RS35015 | 0.28 | +0.4 | |
3,460,509 | + | BPHYT_RS35015 | 0.40 | +0.4 | |
3,460,710 | + | BPHYT_RS35015 | 0.84 | -0.2 | |
3,461,065 | - | BPHYT_RS35020 | 0.25 | +0.2 |
Or see this region's nucleotide sequence