Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34675
Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Bacitracin 0.25 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,384,553 | - | BPHYT_RS34670 | 0.14 | -0.6 | |
3,384,685 | + | BPHYT_RS34670 | 0.26 | +0.0 | |
3,384,974 | + | BPHYT_RS34670 | 0.53 | -0.0 | |
3,385,124 | - | BPHYT_RS34670 | 0.67 | -0.1 | |
3,385,124 | - | BPHYT_RS34670 | 0.67 | +2.8 | |
3,385,158 | - | BPHYT_RS34670 | 0.70 | -0.3 | |
3,385,158 | - | BPHYT_RS34670 | 0.70 | -0.2 | |
3,385,158 | - | BPHYT_RS34670 | 0.70 | -0.5 | |
3,385,347 | + | BPHYT_RS34670 | 0.88 | -0.3 | |
3,385,527 | + | -0.4 | |||
3,385,527 | + | -0.4 | |||
3,385,716 | - | BPHYT_RS34675 | 0.14 | -0.7 | |
3,385,716 | - | BPHYT_RS34675 | 0.14 | -0.8 | |
3,385,716 | - | BPHYT_RS34675 | 0.14 | -1.5 | |
3,385,761 | - | BPHYT_RS34675 | 0.17 | -0.6 | |
3,385,761 | - | BPHYT_RS34675 | 0.17 | -2.2 | |
3,386,089 | - | BPHYT_RS34675 | 0.44 | -2.2 | |
3,387,053 | + | -1.9 | |||
3,387,495 | + | +0.3 | |||
3,387,708 | - | BPHYT_RS34680 | 0.18 | -0.9 | |
3,387,718 | - | BPHYT_RS34680 | 0.22 | -0.9 |
Or see this region's nucleotide sequence