Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31210

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS31205 and BPHYT_RS31210 overlap by 4 nucleotidesBPHYT_RS31210 and BPHYT_RS31215 overlap by 4 nucleotides BPHYT_RS31205: BPHYT_RS31205 - peptide ABC transporter ATP-binding protein, at 2,558,203 to 2,559,246 _RS31205 BPHYT_RS31210: BPHYT_RS31210 - ABC transporter substrate-binding protein, at 2,559,243 to 2,560,856 _RS31210 BPHYT_RS31215: BPHYT_RS31215 - antibiotic hydrolase, at 2,560,853 to 2,562,796 _RS31215 Position (kb) 2559 2560 2561Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2558.619 kb on + strand, within BPHYT_RS31205at 2558.899 kb on + strand, within BPHYT_RS31205at 2558.962 kb on + strand, within BPHYT_RS31205at 2559.422 kb on + strand, within BPHYT_RS31210at 2559.605 kb on - strand, within BPHYT_RS31210at 2559.755 kb on + strand, within BPHYT_RS31210at 2559.844 kb on + strand, within BPHYT_RS31210at 2559.891 kb on + strand, within BPHYT_RS31210at 2560.479 kb on + strand, within BPHYT_RS31210at 2560.479 kb on + strand, within BPHYT_RS31210at 2560.488 kb on + strand, within BPHYT_RS31210at 2560.488 kb on + strand, within BPHYT_RS31210at 2560.591 kb on - strand, within BPHYT_RS31210at 2560.964 kb on + strandat 2561.105 kb on + strand, within BPHYT_RS31215at 2561.157 kb on - strand, within BPHYT_RS31215at 2561.183 kb on + strand, within BPHYT_RS31215at 2561.630 kb on + strand, within BPHYT_RS31215at 2561.630 kb on + strand, within BPHYT_RS31215at 2561.700 kb on - strand, within BPHYT_RS31215at 2561.700 kb on - strand, within BPHYT_RS31215

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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2,558,619 + BPHYT_RS31205 0.40 -0.7
2,558,899 + BPHYT_RS31205 0.67 -1.1
2,558,962 + BPHYT_RS31205 0.73 -1.8
2,559,422 + BPHYT_RS31210 0.11 -0.7
2,559,605 - BPHYT_RS31210 0.22 -0.2
2,559,755 + BPHYT_RS31210 0.32 -0.2
2,559,844 + BPHYT_RS31210 0.37 -0.8
2,559,891 + BPHYT_RS31210 0.40 -2.0
2,560,479 + BPHYT_RS31210 0.77 -3.4
2,560,479 + BPHYT_RS31210 0.77 -4.0
2,560,488 + BPHYT_RS31210 0.77 -1.5
2,560,488 + BPHYT_RS31210 0.77 -2.1
2,560,591 - BPHYT_RS31210 0.84 -0.1
2,560,964 + +1.5
2,561,105 + BPHYT_RS31215 0.13 -0.5
2,561,157 - BPHYT_RS31215 0.16 +0.9
2,561,183 + BPHYT_RS31215 0.17 -0.6
2,561,630 + BPHYT_RS31215 0.40 -0.2
2,561,630 + BPHYT_RS31215 0.40 -0.6
2,561,700 - BPHYT_RS31215 0.44 -1.2
2,561,700 - BPHYT_RS31215 0.44 +0.3

Or see this region's nucleotide sequence