Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26950

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26945 and BPHYT_RS26950 are separated by 155 nucleotidesBPHYT_RS26950 and BPHYT_RS26955 are separated by 37 nucleotides BPHYT_RS26945: BPHYT_RS26945 - MBL fold metallo-hydrolase, at 1,622,920 to 1,623,807 _RS26945 BPHYT_RS26950: BPHYT_RS26950 - MFS transporter, at 1,623,963 to 1,625,378 _RS26950 BPHYT_RS26955: BPHYT_RS26955 - succinylglutamate desuccinylase, at 1,625,416 to 1,626,429 _RS26955 Position (kb) 1623 1624 1625 1626Strain fitness (log2 ratio) -1 0 1at 1623.110 kb on + strand, within BPHYT_RS26945at 1623.186 kb on + strand, within BPHYT_RS26945at 1623.199 kb on - strand, within BPHYT_RS26945at 1623.226 kb on - strand, within BPHYT_RS26945at 1623.371 kb on + strand, within BPHYT_RS26945at 1623.371 kb on + strand, within BPHYT_RS26945at 1623.372 kb on - strand, within BPHYT_RS26945at 1623.852 kb on + strandat 1623.874 kb on + strandat 1624.256 kb on - strand, within BPHYT_RS26950at 1624.256 kb on - strand, within BPHYT_RS26950at 1624.428 kb on - strand, within BPHYT_RS26950at 1624.428 kb on - strand, within BPHYT_RS26950at 1624.541 kb on - strand, within BPHYT_RS26950at 1624.910 kb on + strand, within BPHYT_RS26950at 1624.911 kb on - strand, within BPHYT_RS26950at 1624.913 kb on - strand, within BPHYT_RS26950at 1625.813 kb on - strand, within BPHYT_RS26955

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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1,623,110 + BPHYT_RS26945 0.21 -0.3
1,623,186 + BPHYT_RS26945 0.30 -0.7
1,623,199 - BPHYT_RS26945 0.31 +0.1
1,623,226 - BPHYT_RS26945 0.34 +0.0
1,623,371 + BPHYT_RS26945 0.51 -0.0
1,623,371 + BPHYT_RS26945 0.51 -0.0
1,623,372 - BPHYT_RS26945 0.51 -0.4
1,623,852 + +0.3
1,623,874 + +0.5
1,624,256 - BPHYT_RS26950 0.21 +0.5
1,624,256 - BPHYT_RS26950 0.21 +0.2
1,624,428 - BPHYT_RS26950 0.33 +0.2
1,624,428 - BPHYT_RS26950 0.33 +0.1
1,624,541 - BPHYT_RS26950 0.41 +0.0
1,624,910 + BPHYT_RS26950 0.67 +0.6
1,624,911 - BPHYT_RS26950 0.67 -0.1
1,624,913 - BPHYT_RS26950 0.67 +0.4
1,625,813 - BPHYT_RS26955 0.39 +1.1

Or see this region's nucleotide sequence