Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18595

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS18585 and BPHYT_RS18590 are separated by 22 nucleotidesBPHYT_RS18590 and BPHYT_RS18595 are separated by 749 nucleotidesBPHYT_RS18595 and BPHYT_RS18600 overlap by 4 nucleotidesBPHYT_RS18600 and BPHYT_RS18605 are separated by 26 nucleotides BPHYT_RS18585: BPHYT_RS18585 - hypothetical protein, at 4,180,631 to 4,181,821 _RS18585 BPHYT_RS18590: BPHYT_RS18590 - hypothetical protein, at 4,181,844 to 4,182,038 _RS18590 BPHYT_RS18595: BPHYT_RS18595 - multifunctional CCA protein, at 4,182,788 to 4,184,020 _RS18595 BPHYT_RS18600: BPHYT_RS18600 - glutathione S-transferase, at 4,184,017 to 4,184,670 _RS18600 BPHYT_RS18605: BPHYT_RS18605 - NAD-dependent dehydratase, at 4,184,697 to 4,185,650 _RS18605 Position (kb) 4182 4183 4184 4185Strain fitness (log2 ratio) -3 -2 -1 0 1at 4181.813 kb on - strandat 4181.813 kb on - strandat 4181.813 kb on - strandat 4181.813 kb on - strandat 4181.865 kb on - strand, within BPHYT_RS18590at 4182.036 kb on + strandat 4182.036 kb on + strandat 4182.127 kb on - strandat 4182.158 kb on - strandat 4182.158 kb on - strandat 4182.714 kb on + strandat 4184.011 kb on - strandat 4184.115 kb on - strand, within BPHYT_RS18600at 4184.611 kb on + strandat 4184.643 kb on - strandat 4184.677 kb on + strandat 4184.678 kb on - strandat 4184.758 kb on + strandat 4184.971 kb on + strand, within BPHYT_RS18605at 4185.019 kb on + strand, within BPHYT_RS18605at 4185.020 kb on - strand, within BPHYT_RS18605at 4185.020 kb on - strand, within BPHYT_RS18605

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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4,181,813 - -1.5
4,181,813 - -1.1
4,181,813 - -0.4
4,181,813 - -0.6
4,181,865 - BPHYT_RS18590 0.11 -2.2
4,182,036 + -0.5
4,182,036 + -0.8
4,182,127 - -0.1
4,182,158 - +1.1
4,182,158 - +0.1
4,182,714 + -0.7
4,184,011 - +0.4
4,184,115 - BPHYT_RS18600 0.15 -0.6
4,184,611 + -3.0
4,184,643 - -0.4
4,184,677 + -1.7
4,184,678 - +0.1
4,184,758 + +0.5
4,184,971 + BPHYT_RS18605 0.29 -0.3
4,185,019 + BPHYT_RS18605 0.34 -0.3
4,185,020 - BPHYT_RS18605 0.34 +0.1
4,185,020 - BPHYT_RS18605 0.34 -0.0

Or see this region's nucleotide sequence