Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17890
Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Bacitracin 0.25 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,038,711 | + | BPHYT_RS17885 | 0.13 | -1.0 | |
4,038,712 | - | BPHYT_RS17885 | 0.13 | -3.0 | |
4,038,813 | - | BPHYT_RS17885 | 0.22 | -2.0 | |
4,039,179 | + | BPHYT_RS17885 | 0.56 | -1.3 | |
4,039,299 | + | BPHYT_RS17885 | 0.67 | -0.4 | |
4,039,300 | - | BPHYT_RS17885 | 0.67 | -0.5 | |
4,039,428 | + | BPHYT_RS17885 | 0.79 | +0.0 | |
4,039,429 | - | BPHYT_RS17885 | 0.79 | -0.7 | |
4,039,429 | - | BPHYT_RS17885 | 0.79 | -1.3 | |
4,039,645 | + | -2.2 | |||
4,039,645 | + | -0.1 | |||
4,039,651 | + | -0.8 | |||
4,039,652 | - | +0.2 | |||
4,039,652 | - | -1.4 | |||
4,039,652 | - | -0.4 | |||
4,039,662 | - | -0.1 | |||
4,039,778 | - | BPHYT_RS17890 | 0.21 | -1.1 | |
4,039,797 | - | BPHYT_RS17890 | 0.25 | -1.6 | |
4,039,899 | - | BPHYT_RS17890 | 0.43 | -2.6 | |
4,040,173 | + | -0.8 | |||
4,040,183 | - | -3.1 | |||
4,040,253 | + | -1.1 | |||
4,040,337 | - | -0.7 | |||
4,040,383 | + | -0.2 | |||
4,040,503 | + | +1.2 | |||
4,040,578 | - | -0.4 | |||
4,040,783 | + | BPHYT_RS17895 | 0.21 | -0.0 | |
4,040,984 | + | BPHYT_RS17895 | 0.32 | -0.1 | |
4,040,984 | + | BPHYT_RS17895 | 0.32 | +0.1 | |
4,041,133 | + | BPHYT_RS17895 | 0.41 | -0.3 | |
4,041,133 | + | BPHYT_RS17895 | 0.41 | +0.2 | |
4,041,134 | - | BPHYT_RS17895 | 0.41 | +0.5 | |
4,041,134 | - | BPHYT_RS17895 | 0.41 | -0.5 |
Or see this region's nucleotide sequence