Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS16265 and BPHYT_RS16270 are separated by 460 nucleotides BPHYT_RS16270 and BPHYT_RS16275 are separated by 271 nucleotides BPHYT_RS16275 and BPHYT_RS16280 overlap by 4 nucleotides
BPHYT_RS16265: BPHYT_RS16265 - hypothetical protein, at 3,692,490 to 3,693,926
_RS16265
BPHYT_RS16270: BPHYT_RS16270 - phosphoglycerate kinase, at 3,694,387 to 3,695,580
_RS16270
BPHYT_RS16275: BPHYT_RS16275 - branched-chain amino acid transporter, at 3,695,852 to 3,696,175
_RS16275
BPHYT_RS16280: BPHYT_RS16280 - branched-chain amino acid ABC transporter permease, at 3,696,172 to 3,696,918
_RS16280
Position (kb)
3694
3695
3696 Strain fitness (log2 ratio)
-2
-1
0
1 at 3693.601 kb on + strand, within BPHYT_RS16265 at 3693.878 kb on + strand at 3693.879 kb on - strand at 3694.471 kb on - strand at 3694.471 kb on - strand at 3694.472 kb on + strand at 3694.473 kb on - strand at 3694.497 kb on - strand at 3695.154 kb on - strand, within BPHYT_RS16270 at 3695.154 kb on - strand, within BPHYT_RS16270 at 3695.154 kb on - strand, within BPHYT_RS16270 at 3695.154 kb on - strand, within BPHYT_RS16270 at 3695.570 kb on - strand at 3695.752 kb on + strand at 3695.752 kb on + strand at 3695.955 kb on + strand, within BPHYT_RS16275 at 3695.956 kb on - strand, within BPHYT_RS16275 at 3695.956 kb on - strand, within BPHYT_RS16275 at 3696.006 kb on - strand, within BPHYT_RS16275 at 3696.006 kb on - strand, within BPHYT_RS16275 at 3696.421 kb on - strand, within BPHYT_RS16280 at 3696.503 kb on + strand, within BPHYT_RS16280 at 3696.504 kb on - strand, within BPHYT_RS16280 at 3696.506 kb on + strand, within BPHYT_RS16280 at 3696.506 kb on + strand, within BPHYT_RS16280 at 3696.507 kb on - strand, within BPHYT_RS16280 at 3696.507 kb on - strand, within BPHYT_RS16280 at 3696.507 kb on - strand, within BPHYT_RS16280 at 3696.507 kb on - strand, within BPHYT_RS16280 at 3696.507 kb on - strand, within BPHYT_RS16280 at 3696.507 kb on - strand, within BPHYT_RS16280 at 3696.527 kb on + strand, within BPHYT_RS16280 at 3696.527 kb on + strand, within BPHYT_RS16280 at 3696.527 kb on + strand, within BPHYT_RS16280 at 3696.563 kb on + strand, within BPHYT_RS16280 at 3696.564 kb on - strand, within BPHYT_RS16280 at 3696.564 kb on - strand, within BPHYT_RS16280 at 3696.564 kb on - strand, within BPHYT_RS16280 at 3696.564 kb on - strand, within BPHYT_RS16280
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml remove 3,693,601 + BPHYT_RS16265 0.77 +0.5 3,693,878 + +0.6 3,693,879 - -0.0 3,694,471 - -1.5 3,694,471 - -2.4 3,694,472 + +1.3 3,694,473 - -2.0 3,694,497 - +0.6 3,695,154 - BPHYT_RS16270 0.64 -1.7 3,695,154 - BPHYT_RS16270 0.64 -2.4 3,695,154 - BPHYT_RS16270 0.64 -0.7 3,695,154 - BPHYT_RS16270 0.64 -1.3 3,695,570 - -1.7 3,695,752 + +1.0 3,695,752 + +0.5 3,695,955 + BPHYT_RS16275 0.32 -0.3 3,695,956 - BPHYT_RS16275 0.32 +0.9 3,695,956 - BPHYT_RS16275 0.32 -0.5 3,696,006 - BPHYT_RS16275 0.48 +0.3 3,696,006 - BPHYT_RS16275 0.48 +0.4 3,696,421 - BPHYT_RS16280 0.33 -1.0 3,696,503 + BPHYT_RS16280 0.44 +1.2 3,696,504 - BPHYT_RS16280 0.44 -0.8 3,696,506 + BPHYT_RS16280 0.45 +0.3 3,696,506 + BPHYT_RS16280 0.45 -0.1 3,696,507 - BPHYT_RS16280 0.45 +0.2 3,696,507 - BPHYT_RS16280 0.45 +1.0 3,696,507 - BPHYT_RS16280 0.45 -0.3 3,696,507 - BPHYT_RS16280 0.45 -1.4 3,696,507 - BPHYT_RS16280 0.45 +0.0 3,696,507 - BPHYT_RS16280 0.45 -0.4 3,696,527 + BPHYT_RS16280 0.48 +0.9 3,696,527 + BPHYT_RS16280 0.48 +0.1 3,696,527 + BPHYT_RS16280 0.48 +0.2 3,696,563 + BPHYT_RS16280 0.52 +0.4 3,696,564 - BPHYT_RS16280 0.52 +0.0 3,696,564 - BPHYT_RS16280 0.52 +0.0 3,696,564 - BPHYT_RS16280 0.52 +0.4 3,696,564 - BPHYT_RS16280 0.52 +0.0
Or see this region's nucleotide sequence