Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS15560 and BPHYT_RS15565 are separated by 167 nucleotides BPHYT_RS15565 and BPHYT_RS15570 are separated by 156 nucleotides BPHYT_RS15570 and BPHYT_RS15575 are separated by 109 nucleotides
BPHYT_RS15560: BPHYT_RS15560 - pseudouridine synthase, at 3,531,392 to 3,532,102
_RS15560
BPHYT_RS15565: BPHYT_RS15565 - membrane protein, at 3,532,270 to 3,532,458
_RS15565
BPHYT_RS15570: BPHYT_RS15570 - NAD-dependent dehydratase, at 3,532,615 to 3,533,640
_RS15570
BPHYT_RS15575: BPHYT_RS15575 - CDP-6-deoxy-delta-3,4-glucoseen reductase, at 3,533,750 to 3,534,781
_RS15575
Position (kb)
3532
3533
3534 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3531.778 kb on + strand, within BPHYT_RS15560 at 3531.794 kb on + strand, within BPHYT_RS15560 at 3531.794 kb on + strand, within BPHYT_RS15560 at 3531.794 kb on + strand, within BPHYT_RS15560 at 3531.794 kb on + strand, within BPHYT_RS15560 at 3531.794 kb on + strand, within BPHYT_RS15560 at 3531.795 kb on - strand, within BPHYT_RS15560 at 3531.795 kb on - strand, within BPHYT_RS15560 at 3531.797 kb on - strand, within BPHYT_RS15560 at 3531.947 kb on + strand, within BPHYT_RS15560 at 3531.947 kb on + strand, within BPHYT_RS15560 at 3531.947 kb on + strand, within BPHYT_RS15560 at 3531.947 kb on + strand, within BPHYT_RS15560 at 3531.948 kb on - strand, within BPHYT_RS15560 at 3531.948 kb on - strand, within BPHYT_RS15560 at 3532.212 kb on + strand at 3532.213 kb on - strand at 3532.224 kb on + strand at 3532.224 kb on + strand at 3532.226 kb on + strand at 3532.245 kb on + strand at 3532.378 kb on + strand, within BPHYT_RS15565 at 3532.457 kb on - strand at 3532.592 kb on - strand at 3532.686 kb on + strand at 3532.700 kb on - strand at 3532.821 kb on - strand, within BPHYT_RS15570 at 3532.861 kb on + strand, within BPHYT_RS15570 at 3532.862 kb on - strand, within BPHYT_RS15570 at 3532.862 kb on - strand, within BPHYT_RS15570 at 3533.009 kb on + strand, within BPHYT_RS15570 at 3533.009 kb on + strand, within BPHYT_RS15570 at 3533.010 kb on - strand, within BPHYT_RS15570 at 3533.010 kb on - strand, within BPHYT_RS15570 at 3533.175 kb on + strand, within BPHYT_RS15570 at 3533.185 kb on + strand, within BPHYT_RS15570 at 3533.241 kb on + strand, within BPHYT_RS15570 at 3533.242 kb on - strand, within BPHYT_RS15570 at 3533.242 kb on - strand, within BPHYT_RS15570 at 3533.242 kb on - strand, within BPHYT_RS15570 at 3533.596 kb on + strand at 3533.602 kb on + strand at 3533.603 kb on - strand at 3533.603 kb on - strand at 3533.654 kb on + strand at 3533.655 kb on - strand at 3533.758 kb on + strand at 3533.758 kb on + strand at 3533.759 kb on - strand at 3533.759 kb on - strand at 3533.759 kb on - strand at 3533.796 kb on + strand at 3534.143 kb on + strand, within BPHYT_RS15575 at 3534.197 kb on + strand, within BPHYT_RS15575 at 3534.289 kb on + strand, within BPHYT_RS15575 at 3534.491 kb on + strand, within BPHYT_RS15575 at 3534.491 kb on + strand, within BPHYT_RS15575 at 3534.492 kb on - strand, within BPHYT_RS15575
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml remove 3,531,778 + BPHYT_RS15560 0.54 +0.4 3,531,794 + BPHYT_RS15560 0.57 +1.8 3,531,794 + BPHYT_RS15560 0.57 +0.3 3,531,794 + BPHYT_RS15560 0.57 -0.9 3,531,794 + BPHYT_RS15560 0.57 -0.4 3,531,794 + BPHYT_RS15560 0.57 +0.6 3,531,795 - BPHYT_RS15560 0.57 -0.5 3,531,795 - BPHYT_RS15560 0.57 +0.0 3,531,797 - BPHYT_RS15560 0.57 +0.0 3,531,947 + BPHYT_RS15560 0.78 +0.3 3,531,947 + BPHYT_RS15560 0.78 -0.0 3,531,947 + BPHYT_RS15560 0.78 +0.3 3,531,947 + BPHYT_RS15560 0.78 -0.1 3,531,948 - BPHYT_RS15560 0.78 +0.4 3,531,948 - BPHYT_RS15560 0.78 +0.3 3,532,212 + -0.4 3,532,213 - -0.2 3,532,224 + -0.6 3,532,224 + +0.2 3,532,226 + +0.0 3,532,245 + -0.1 3,532,378 + BPHYT_RS15565 0.57 -0.3 3,532,457 - -0.3 3,532,592 - -1.0 3,532,686 + -0.4 3,532,700 - -0.9 3,532,821 - BPHYT_RS15570 0.20 -0.9 3,532,861 + BPHYT_RS15570 0.24 +0.0 3,532,862 - BPHYT_RS15570 0.24 -0.4 3,532,862 - BPHYT_RS15570 0.24 -0.1 3,533,009 + BPHYT_RS15570 0.38 -1.6 3,533,009 + BPHYT_RS15570 0.38 +0.3 3,533,010 - BPHYT_RS15570 0.38 +0.1 3,533,010 - BPHYT_RS15570 0.38 +1.0 3,533,175 + BPHYT_RS15570 0.55 +0.3 3,533,185 + BPHYT_RS15570 0.56 +0.2 3,533,241 + BPHYT_RS15570 0.61 +0.6 3,533,242 - BPHYT_RS15570 0.61 -2.0 3,533,242 - BPHYT_RS15570 0.61 -1.4 3,533,242 - BPHYT_RS15570 0.61 +0.2 3,533,596 + -0.4 3,533,602 + +1.3 3,533,603 - -2.8 3,533,603 - -1.4 3,533,654 + +0.9 3,533,655 - -2.3 3,533,758 + -0.8 3,533,758 + -1.2 3,533,759 - -0.9 3,533,759 - -4.4 3,533,759 - -1.9 3,533,796 + -1.8 3,534,143 + BPHYT_RS15575 0.38 -1.5 3,534,197 + BPHYT_RS15575 0.43 -2.2 3,534,289 + BPHYT_RS15575 0.52 -1.6 3,534,491 + BPHYT_RS15575 0.72 -3.8 3,534,491 + BPHYT_RS15575 0.72 -1.7 3,534,492 - BPHYT_RS15575 0.72 -1.8
Or see this region's nucleotide sequence