Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14740

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS14730 and BPHYT_RS14735 are separated by 1 nucleotidesBPHYT_RS14735 and BPHYT_RS14740 are separated by 201 nucleotidesBPHYT_RS14740 and BPHYT_RS14745 are separated by 113 nucleotidesBPHYT_RS14745 and BPHYT_RS14750 are separated by 93 nucleotides BPHYT_RS14730: BPHYT_RS14730 - GTPase RsgA, at 3,354,981 to 3,355,931 _RS14730 BPHYT_RS14735: BPHYT_RS14735 - hypothetical protein, at 3,355,933 to 3,356,253 _RS14735 BPHYT_RS14740: BPHYT_RS14740 - threonine-phosphate decarboxylase, at 3,356,455 to 3,357,393 _RS14740 BPHYT_RS14745: BPHYT_RS14745 - DNA mismatch repair protein MutT, at 3,357,507 to 3,358,235 _RS14745 BPHYT_RS14750: BPHYT_RS14750 - 50S ribosomal protein L19, at 3,358,329 to 3,358,718 _RS14750 Position (kb) 3356 3357 3358Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3355.890 kb on + strandat 3356.205 kb on + strand, within BPHYT_RS14735at 3356.283 kb on + strandat 3356.284 kb on - strandat 3356.506 kb on + strandat 3356.507 kb on - strandat 3356.726 kb on + strand, within BPHYT_RS14740at 3356.727 kb on - strand, within BPHYT_RS14740at 3356.986 kb on - strand, within BPHYT_RS14740at 3356.986 kb on - strand, within BPHYT_RS14740at 3356.986 kb on - strand, within BPHYT_RS14740at 3357.013 kb on - strand, within BPHYT_RS14740at 3357.021 kb on + strand, within BPHYT_RS14740at 3357.137 kb on + strand, within BPHYT_RS14740at 3357.186 kb on - strand, within BPHYT_RS14740at 3357.194 kb on + strand, within BPHYT_RS14740at 3357.194 kb on + strand, within BPHYT_RS14740at 3357.194 kb on + strand, within BPHYT_RS14740at 3357.194 kb on + strand, within BPHYT_RS14740at 3357.194 kb on + strand, within BPHYT_RS14740at 3357.195 kb on - strand, within BPHYT_RS14740at 3357.195 kb on - strand, within BPHYT_RS14740at 3357.195 kb on - strand, within BPHYT_RS14740at 3357.197 kb on + strand, within BPHYT_RS14740at 3357.197 kb on + strand, within BPHYT_RS14740at 3357.305 kb on + strandat 3357.376 kb on + strandat 3357.419 kb on + strandat 3357.420 kb on - strandat 3357.430 kb on + strandat 3357.430 kb on + strandat 3357.431 kb on - strandat 3357.526 kb on + strandat 3357.568 kb on + strandat 3357.569 kb on - strandat 3358.321 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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3,355,890 + -0.7
3,356,205 + BPHYT_RS14735 0.85 -0.2
3,356,283 + -1.7
3,356,284 - +1.1
3,356,506 + -5.2
3,356,507 - -0.7
3,356,726 + BPHYT_RS14740 0.29 -1.2
3,356,727 - BPHYT_RS14740 0.29 -1.5
3,356,986 - BPHYT_RS14740 0.57 -1.5
3,356,986 - BPHYT_RS14740 0.57 -1.6
3,356,986 - BPHYT_RS14740 0.57 -0.7
3,357,013 - BPHYT_RS14740 0.59 -2.1
3,357,021 + BPHYT_RS14740 0.60 -2.1
3,357,137 + BPHYT_RS14740 0.73 -1.7
3,357,186 - BPHYT_RS14740 0.78 -2.7
3,357,194 + BPHYT_RS14740 0.79 -0.7
3,357,194 + BPHYT_RS14740 0.79 -1.1
3,357,194 + BPHYT_RS14740 0.79 -1.7
3,357,194 + BPHYT_RS14740 0.79 -2.5
3,357,194 + BPHYT_RS14740 0.79 -1.5
3,357,195 - BPHYT_RS14740 0.79 -1.3
3,357,195 - BPHYT_RS14740 0.79 -1.7
3,357,195 - BPHYT_RS14740 0.79 -2.3
3,357,197 + BPHYT_RS14740 0.79 -0.5
3,357,197 + BPHYT_RS14740 0.79 -1.4
3,357,305 + -2.4
3,357,376 + -1.5
3,357,419 + -0.8
3,357,420 - -0.1
3,357,430 + -2.3
3,357,430 + -1.1
3,357,431 - +0.1
3,357,526 + +0.3
3,357,568 + -0.4
3,357,569 - -0.2
3,358,321 + +0.7

Or see this region's nucleotide sequence