Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14680
Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Bacitracin 0.25 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,343,502 | + | BPHYT_RS14675 | 0.37 | -0.2 | |
3,343,502 | + | BPHYT_RS14675 | 0.37 | -1.7 | |
3,343,502 | + | BPHYT_RS14675 | 0.37 | -0.7 | |
3,343,502 | + | BPHYT_RS14675 | 0.37 | -2.8 | |
3,343,503 | - | BPHYT_RS14675 | 0.37 | -0.3 | |
3,343,503 | - | BPHYT_RS14675 | 0.37 | -0.7 | |
3,343,509 | - | BPHYT_RS14675 | 0.37 | +0.4 | |
3,343,509 | - | BPHYT_RS14675 | 0.37 | +0.6 | |
3,343,592 | + | BPHYT_RS14675 | 0.43 | -1.7 | |
3,343,612 | - | BPHYT_RS14675 | 0.45 | +1.2 | |
3,343,664 | + | BPHYT_RS14675 | 0.48 | -1.0 | |
3,344,460 | - | +0.3 | |||
3,344,460 | - | +0.6 | |||
3,344,461 | + | -4.8 | |||
3,344,461 | + | -3.4 | |||
3,344,507 | + | +0.6 | |||
3,344,508 | - | -0.4 | |||
3,344,669 | - | BPHYT_RS14680 | 0.27 | -0.3 | |
3,344,708 | - | BPHYT_RS14680 | 0.32 | -2.5 | |
3,344,713 | + | BPHYT_RS14680 | 0.33 | -2.4 | |
3,344,714 | - | BPHYT_RS14680 | 0.33 | -1.2 | |
3,344,714 | - | BPHYT_RS14680 | 0.33 | -0.3 | |
3,345,401 | + | BPHYT_RS14685 | 0.24 | -1.9 | |
3,345,722 | - | BPHYT_RS14685 | 0.63 | -0.2 | |
3,345,919 | + | BPHYT_RS14685 | 0.87 | -5.0 | |
3,345,920 | - | BPHYT_RS14685 | 0.87 | +0.0 | |
3,345,993 | + | -2.7 | |||
3,346,065 | + | -4.6 | |||
3,346,065 | + | -5.7 | |||
3,346,066 | - | +0.3 | |||
3,346,066 | - | -0.7 |
Or see this region's nucleotide sequence