Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09315

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS09310 and BPHYT_RS09315 are separated by 44 nucleotidesBPHYT_RS09315 and BPHYT_RS09320 are separated by 934 nucleotides BPHYT_RS09310: BPHYT_RS09310 - sensor histidine kinase, at 2,110,366 to 2,111,715 _RS09310 BPHYT_RS09315: BPHYT_RS09315 - chemotaxis protein CheY, at 2,111,760 to 2,112,485 _RS09315 BPHYT_RS09320: BPHYT_RS09320 - hypothetical protein, at 2,113,420 to 2,114,883 _RS09320 Position (kb) 2111 2112 2113Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2111.426 kb on + strand, within BPHYT_RS09310at 2111.427 kb on - strand, within BPHYT_RS09310at 2111.427 kb on - strand, within BPHYT_RS09310at 2112.386 kb on - strand, within BPHYT_RS09315at 2112.507 kb on - strandat 2112.542 kb on - strandat 2112.597 kb on - strandat 2112.679 kb on - strandat 2112.681 kb on - strandat 2112.981 kb on + strandat 2112.981 kb on + strandat 2112.981 kb on + strandat 2112.982 kb on - strandat 2113.042 kb on + strandat 2113.056 kb on - strandat 2113.154 kb on + strandat 2113.242 kb on + strandat 2113.242 kb on + strandat 2113.242 kb on + strandat 2113.243 kb on - strandat 2113.243 kb on - strandat 2113.261 kb on - strandat 2113.280 kb on + strandat 2113.280 kb on + strandat 2113.281 kb on - strandat 2113.281 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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2,111,426 + BPHYT_RS09310 0.79 -1.0
2,111,427 - BPHYT_RS09310 0.79 +0.4
2,111,427 - BPHYT_RS09310 0.79 +1.5
2,112,386 - BPHYT_RS09315 0.86 -3.7
2,112,507 - +2.0
2,112,542 - +1.8
2,112,597 - +2.6
2,112,679 - +1.7
2,112,681 - +1.9
2,112,981 + +2.2
2,112,981 + +2.2
2,112,981 + +2.8
2,112,982 - +2.8
2,113,042 + +2.4
2,113,056 - +1.4
2,113,154 + +0.1
2,113,242 + -0.8
2,113,242 + +0.3
2,113,242 + -0.1
2,113,243 - +2.2
2,113,243 - +2.1
2,113,261 - +1.5
2,113,280 + +0.4
2,113,280 + -0.9
2,113,281 - +2.4
2,113,281 - +2.5

Or see this region's nucleotide sequence