Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01435

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS01430 and BPHYT_RS01435 are separated by 340 nucleotidesBPHYT_RS01435 and BPHYT_RS01440 are separated by 160 nucleotides BPHYT_RS01430: BPHYT_RS01430 - phosphoenolpyruvate carboxykinase, at 324,858 to 326,714 _RS01430 BPHYT_RS01435: BPHYT_RS01435 - LysR family transcriptional regulator, at 327,055 to 328,158 _RS01435 BPHYT_RS01440: BPHYT_RS01440 - DNA topoisomerase III, at 328,319 to 330,988 _RS01440 Position (kb) 327 328 329Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 326.199 kb on + strand, within BPHYT_RS01430at 326.199 kb on + strand, within BPHYT_RS01430at 326.199 kb on + strand, within BPHYT_RS01430at 326.200 kb on - strand, within BPHYT_RS01430at 326.200 kb on - strand, within BPHYT_RS01430at 326.200 kb on - strand, within BPHYT_RS01430at 326.200 kb on - strand, within BPHYT_RS01430at 326.200 kb on - strand, within BPHYT_RS01430at 326.313 kb on + strand, within BPHYT_RS01430at 326.313 kb on + strand, within BPHYT_RS01430at 326.526 kb on + strand, within BPHYT_RS01430at 326.527 kb on - strand, within BPHYT_RS01430at 326.762 kb on + strandat 326.763 kb on - strandat 326.908 kb on + strandat 326.938 kb on + strandat 326.938 kb on + strandat 326.938 kb on + strandat 326.939 kb on - strandat 326.939 kb on - strandat 326.939 kb on - strandat 326.982 kb on + strandat 326.982 kb on + strandat 326.983 kb on - strandat 326.983 kb on - strandat 327.035 kb on - strandat 327.035 kb on - strandat 327.035 kb on - strandat 327.135 kb on + strandat 327.135 kb on + strandat 327.136 kb on - strandat 327.136 kb on - strandat 327.185 kb on + strand, within BPHYT_RS01435at 327.185 kb on + strand, within BPHYT_RS01435at 327.185 kb on + strand, within BPHYT_RS01435at 327.185 kb on + strand, within BPHYT_RS01435at 327.185 kb on + strand, within BPHYT_RS01435at 327.185 kb on + strand, within BPHYT_RS01435at 327.185 kb on + strand, within BPHYT_RS01435at 327.185 kb on + strand, within BPHYT_RS01435at 327.186 kb on - strand, within BPHYT_RS01435at 327.186 kb on - strand, within BPHYT_RS01435at 327.186 kb on - strand, within BPHYT_RS01435at 327.189 kb on + strand, within BPHYT_RS01435at 327.189 kb on + strand, within BPHYT_RS01435at 327.190 kb on - strand, within BPHYT_RS01435at 327.247 kb on + strand, within BPHYT_RS01435at 327.247 kb on + strand, within BPHYT_RS01435at 327.247 kb on + strand, within BPHYT_RS01435at 327.247 kb on + strand, within BPHYT_RS01435at 327.394 kb on + strand, within BPHYT_RS01435at 327.394 kb on + strand, within BPHYT_RS01435at 327.394 kb on + strand, within BPHYT_RS01435at 327.395 kb on - strand, within BPHYT_RS01435at 327.395 kb on - strand, within BPHYT_RS01435at 327.395 kb on - strandat 327.513 kb on + strandat 327.513 kb on + strand, within BPHYT_RS01435at 327.513 kb on + strand, within BPHYT_RS01435at 327.513 kb on + strand, within BPHYT_RS01435at 327.513 kb on + strand, within BPHYT_RS01435at 327.514 kb on - strand, within BPHYT_RS01435at 327.514 kb on - strand, within BPHYT_RS01435at 327.514 kb on - strand, within BPHYT_RS01435at 327.568 kb on + strand, within BPHYT_RS01435at 327.643 kb on + strand, within BPHYT_RS01435at 327.643 kb on + strand, within BPHYT_RS01435at 327.723 kb on + strand, within BPHYT_RS01435at 327.723 kb on + strand, within BPHYT_RS01435at 327.724 kb on - strand, within BPHYT_RS01435at 327.724 kb on - strand, within BPHYT_RS01435at 327.724 kb on - strand, within BPHYT_RS01435at 327.724 kb on - strand, within BPHYT_RS01435at 327.724 kb on - strand, within BPHYT_RS01435at 327.724 kb on - strand, within BPHYT_RS01435at 327.781 kb on + strand, within BPHYT_RS01435at 327.781 kb on + strand, within BPHYT_RS01435at 327.781 kb on + strand, within BPHYT_RS01435at 327.781 kb on + strand, within BPHYT_RS01435at 327.782 kb on - strand, within BPHYT_RS01435at 327.782 kb on - strand, within BPHYT_RS01435at 327.782 kb on - strand, within BPHYT_RS01435at 327.836 kb on - strand, within BPHYT_RS01435at 327.949 kb on - strand, within BPHYT_RS01435at 328.089 kb on - strandat 328.089 kb on - strandat 328.101 kb on + strandat 328.102 kb on - strandat 328.102 kb on - strandat 328.145 kb on + strandat 328.146 kb on - strandat 328.146 kb on - strandat 328.156 kb on + strandat 328.157 kb on - strandat 328.157 kb on - strandat 328.234 kb on - strandat 328.756 kb on - strand, within BPHYT_RS01440

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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326,199 + BPHYT_RS01430 0.72 +0.9
326,199 + BPHYT_RS01430 0.72 -1.0
326,199 + BPHYT_RS01430 0.72 -0.4
326,200 - BPHYT_RS01430 0.72 -0.1
326,200 - BPHYT_RS01430 0.72 +0.2
326,200 - BPHYT_RS01430 0.72 -0.8
326,200 - BPHYT_RS01430 0.72 +0.7
326,200 - BPHYT_RS01430 0.72 -0.5
326,313 + BPHYT_RS01430 0.78 +0.1
326,313 + BPHYT_RS01430 0.78 -0.7
326,526 + BPHYT_RS01430 0.90 +0.1
326,527 - BPHYT_RS01430 0.90 +0.5
326,762 + -0.5
326,763 - -2.4
326,908 + -0.5
326,938 + -0.2
326,938 + +0.8
326,938 + +0.0
326,939 - +0.0
326,939 - -0.2
326,939 - +0.0
326,982 + -0.2
326,982 + +0.1
326,983 - -3.5
326,983 - -3.8
327,035 - -3.4
327,035 - -3.7
327,035 - -1.4
327,135 + -3.2
327,135 + -3.3
327,136 - -3.7
327,136 - -3.9
327,185 + BPHYT_RS01435 0.12 -3.5
327,185 + BPHYT_RS01435 0.12 -2.6
327,185 + BPHYT_RS01435 0.12 -3.0
327,185 + BPHYT_RS01435 0.12 -2.6
327,185 + BPHYT_RS01435 0.12 -3.1
327,185 + BPHYT_RS01435 0.12 -2.3
327,185 + BPHYT_RS01435 0.12 -1.7
327,185 + BPHYT_RS01435 0.12 -3.7
327,186 - BPHYT_RS01435 0.12 -1.3
327,186 - BPHYT_RS01435 0.12 -3.1
327,186 - BPHYT_RS01435 0.12 -4.0
327,189 + BPHYT_RS01435 0.12 -3.5
327,189 + BPHYT_RS01435 0.12 -4.0
327,190 - BPHYT_RS01435 0.12 -4.1
327,247 + BPHYT_RS01435 0.17 -5.1
327,247 + BPHYT_RS01435 0.17 -4.3
327,247 + BPHYT_RS01435 0.17 -3.2
327,247 + BPHYT_RS01435 0.17 -3.2
327,394 + BPHYT_RS01435 0.31 -2.3
327,394 + BPHYT_RS01435 0.31 -3.9
327,394 + BPHYT_RS01435 0.31 -3.7
327,395 - BPHYT_RS01435 0.31 -3.1
327,395 - BPHYT_RS01435 0.31 -3.6
327,395 - -0.3
327,513 + +1.3
327,513 + BPHYT_RS01435 0.41 -4.6
327,513 + BPHYT_RS01435 0.41 -4.0
327,513 + BPHYT_RS01435 0.41 -3.5
327,513 + BPHYT_RS01435 0.41 -3.4
327,514 - BPHYT_RS01435 0.42 -3.3
327,514 - BPHYT_RS01435 0.42 -2.4
327,514 - BPHYT_RS01435 0.42 -2.7
327,568 + BPHYT_RS01435 0.46 -3.5
327,643 + BPHYT_RS01435 0.53 -3.6
327,643 + BPHYT_RS01435 0.53 -3.8
327,723 + BPHYT_RS01435 0.61 -3.8
327,723 + BPHYT_RS01435 0.61 -3.6
327,724 - BPHYT_RS01435 0.61 -3.0
327,724 - BPHYT_RS01435 0.61 -3.5
327,724 - BPHYT_RS01435 0.61 -3.6
327,724 - BPHYT_RS01435 0.61 -2.1
327,724 - BPHYT_RS01435 0.61 -3.3
327,724 - BPHYT_RS01435 0.61 -4.1
327,781 + BPHYT_RS01435 0.66 -3.7
327,781 + BPHYT_RS01435 0.66 +1.7
327,781 + BPHYT_RS01435 0.66 -3.5
327,781 + BPHYT_RS01435 0.66 -3.5
327,782 - BPHYT_RS01435 0.66 -3.4
327,782 - BPHYT_RS01435 0.66 -4.2
327,782 - BPHYT_RS01435 0.66 -3.9
327,836 - BPHYT_RS01435 0.71 -3.6
327,949 - BPHYT_RS01435 0.81 -1.7
328,089 - -1.5
328,089 - +2.0
328,101 + +0.7
328,102 - -0.1
328,102 - -0.2
328,145 + +0.1
328,146 - -1.6
328,146 - -1.2
328,156 + -0.4
328,157 - -0.3
328,157 - +0.3
328,234 - +0.7
328,756 - BPHYT_RS01440 0.16 -1.1

Or see this region's nucleotide sequence