Experiment: Cisplatin 0.0032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26115 and AO356_26120 overlap by 4 nucleotides AO356_26120 and AO356_26125 are separated by 144 nucleotides AO356_26125 and AO356_26130 are separated by 69 nucleotides AO356_26130 and AO356_26135 are separated by 236 nucleotides
AO356_26115: AO356_26115 - (2Fe-2S)-binding protein, at 5,912,214 to 5,913,587
_26115
AO356_26120: AO356_26120 - cytochrome C2, at 5,913,584 to 5,913,934
_26120
AO356_26125: AO356_26125 - ABC transporter substrate-binding protein, at 5,914,079 to 5,914,861
_26125
AO356_26130: AO356_26130 - hypothetical protein, at 5,914,931 to 5,915,356
_26130
AO356_26135: AO356_26135 - AraC family transcriptional regulator, at 5,915,593 to 5,916,429
_26135
Position (kb) 5914
5915 Strain fitness (log2 ratio) -1
0
1 at 5913.226 kb on - strand, within AO356_26115 at 5913.232 kb on + strand, within AO356_26115 at 5913.233 kb on - strand, within AO356_26115 at 5913.296 kb on + strand, within AO356_26115 at 5913.297 kb on - strand, within AO356_26115 at 5913.504 kb on + strand at 5913.507 kb on + strand at 5913.590 kb on - strand at 5913.590 kb on - strand at 5913.590 kb on - strand at 5913.590 kb on - strand at 5914.055 kb on + strand at 5914.055 kb on + strand at 5914.056 kb on - strand at 5914.238 kb on + strand, within AO356_26125 at 5914.238 kb on + strand, within AO356_26125 at 5914.239 kb on - strand, within AO356_26125 at 5914.450 kb on + strand, within AO356_26125 at 5914.508 kb on - strand, within AO356_26125 at 5914.508 kb on - strand, within AO356_26125 at 5914.520 kb on + strand, within AO356_26125 at 5914.520 kb on + strand, within AO356_26125 at 5914.565 kb on + strand, within AO356_26125 at 5914.715 kb on + strand, within AO356_26125 at 5914.715 kb on + strand, within AO356_26125 at 5914.715 kb on + strand, within AO356_26125 at 5914.716 kb on - strand, within AO356_26125 at 5914.743 kb on + strand, within AO356_26125 at 5914.811 kb on + strand at 5914.812 kb on - strand at 5914.812 kb on - strand at 5914.812 kb on - strand at 5914.832 kb on + strand at 5914.832 kb on + strand at 5914.833 kb on - strand at 5914.847 kb on - strand at 5914.851 kb on - strand at 5914.851 kb on - strand at 5914.947 kb on + strand at 5915.213 kb on - strand, within AO356_26130 at 5915.453 kb on - strand at 5915.470 kb on + strand at 5915.471 kb on - strand at 5915.474 kb on + strand at 5915.475 kb on - strand at 5915.475 kb on - strand at 5915.475 kb on - strand at 5915.677 kb on + strand, within AO356_26135 at 5915.677 kb on + strand, within AO356_26135 at 5915.678 kb on - strand, within AO356_26135 at 5915.678 kb on - strand, within AO356_26135 at 5915.678 kb on - strand, within AO356_26135 at 5915.854 kb on + strand, within AO356_26135 at 5915.854 kb on + strand, within AO356_26135 at 5915.855 kb on - strand, within AO356_26135
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0032 mg/ml remove 5,913,226 - AO356_26115 0.74 -0.2 5,913,232 + AO356_26115 0.74 -0.6 5,913,233 - AO356_26115 0.74 -0.5 5,913,296 + AO356_26115 0.79 -0.2 5,913,297 - AO356_26115 0.79 +0.5 5,913,504 + -0.1 5,913,507 + +0.8 5,913,590 - -0.4 5,913,590 - -0.5 5,913,590 - +0.4 5,913,590 - -0.4 5,914,055 + -0.2 5,914,055 + +0.6 5,914,056 - -0.3 5,914,238 + AO356_26125 0.20 +0.1 5,914,238 + AO356_26125 0.20 -0.6 5,914,239 - AO356_26125 0.20 -0.9 5,914,450 + AO356_26125 0.47 +0.3 5,914,508 - AO356_26125 0.55 -0.2 5,914,508 - AO356_26125 0.55 -0.5 5,914,520 + AO356_26125 0.56 +0.4 5,914,520 + AO356_26125 0.56 -0.9 5,914,565 + AO356_26125 0.62 +0.7 5,914,715 + AO356_26125 0.81 -0.2 5,914,715 + AO356_26125 0.81 -0.7 5,914,715 + AO356_26125 0.81 +0.2 5,914,716 - AO356_26125 0.81 +0.4 5,914,743 + AO356_26125 0.85 -0.1 5,914,811 + -0.0 5,914,812 - +0.9 5,914,812 - +1.3 5,914,812 - +0.6 5,914,832 + -0.0 5,914,832 + +0.7 5,914,833 - +0.5 5,914,847 - +1.0 5,914,851 - -0.5 5,914,851 - +1.1 5,914,947 + +1.3 5,915,213 - AO356_26130 0.66 +1.0 5,915,453 - +1.1 5,915,470 + +1.4 5,915,471 - +1.3 5,915,474 + +1.6 5,915,475 - +1.4 5,915,475 - +0.6 5,915,475 - +0.4 5,915,677 + AO356_26135 0.10 -0.6 5,915,677 + AO356_26135 0.10 -0.0 5,915,678 - AO356_26135 0.10 +0.7 5,915,678 - AO356_26135 0.10 -0.2 5,915,678 - AO356_26135 0.10 -0.2 5,915,854 + AO356_26135 0.31 -0.9 5,915,854 + AO356_26135 0.31 -1.0 5,915,855 - AO356_26135 0.31 -0.7
Or see this region's nucleotide sequence