Experiment: Cisplatin 0.0032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22920 and AO356_22925 are separated by 570 nucleotides AO356_22925 and AO356_22930 are separated by 5 nucleotides
AO356_22920: AO356_22920 - nicotinamidase, at 5,117,972 to 5,118,625
_22920
AO356_22925: AO356_22925 - histidine kinase, at 5,119,196 to 5,121,274
_22925
AO356_22930: AO356_22930 - DNA alkylation repair protein, at 5,121,280 to 5,122,383
_22930
Position (kb) 5119
5120
5121
5122 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5118.255 kb on + strand, within AO356_22920 at 5118.256 kb on - strand, within AO356_22920 at 5118.256 kb on - strand, within AO356_22920 at 5118.351 kb on - strand, within AO356_22920 at 5118.351 kb on - strand, within AO356_22920 at 5118.471 kb on - strand, within AO356_22920 at 5118.471 kb on - strand, within AO356_22920 at 5118.572 kb on + strand at 5118.572 kb on + strand at 5118.572 kb on + strand at 5118.573 kb on - strand at 5118.660 kb on + strand at 5118.661 kb on - strand at 5118.745 kb on + strand at 5118.745 kb on + strand at 5118.882 kb on - strand at 5118.882 kb on - strand at 5119.076 kb on + strand at 5119.182 kb on + strand at 5119.183 kb on - strand at 5119.211 kb on + strand at 5119.262 kb on + strand at 5119.262 kb on + strand at 5119.262 kb on + strand at 5119.263 kb on - strand at 5119.289 kb on - strand at 5119.416 kb on - strand, within AO356_22925 at 5119.562 kb on + strand, within AO356_22925 at 5119.562 kb on + strand, within AO356_22925 at 5119.562 kb on + strand, within AO356_22925 at 5119.563 kb on - strand, within AO356_22925 at 5119.563 kb on - strand, within AO356_22925 at 5119.563 kb on - strand, within AO356_22925 at 5119.763 kb on + strand, within AO356_22925 at 5120.420 kb on + strand, within AO356_22925 at 5120.420 kb on + strand, within AO356_22925 at 5120.421 kb on - strand, within AO356_22925 at 5120.421 kb on - strand, within AO356_22925 at 5120.421 kb on - strand, within AO356_22925 at 5120.421 kb on - strand, within AO356_22925 at 5120.553 kb on - strand, within AO356_22925 at 5120.739 kb on - strand, within AO356_22925 at 5120.739 kb on - strand, within AO356_22925 at 5120.753 kb on - strand, within AO356_22925 at 5120.842 kb on + strand, within AO356_22925 at 5120.842 kb on + strand, within AO356_22925 at 5120.843 kb on - strand, within AO356_22925 at 5120.843 kb on - strand, within AO356_22925 at 5120.993 kb on + strand, within AO356_22925 at 5120.993 kb on + strand, within AO356_22925 at 5120.993 kb on + strand, within AO356_22925 at 5121.197 kb on + strand at 5121.197 kb on + strand at 5121.384 kb on + strand at 5121.384 kb on + strand at 5121.384 kb on + strand at 5121.385 kb on - strand at 5121.385 kb on - strand at 5121.673 kb on - strand, within AO356_22930 at 5121.673 kb on - strand, within AO356_22930 at 5121.673 kb on - strand, within AO356_22930 at 5121.803 kb on + strand, within AO356_22930 at 5121.803 kb on + strand, within AO356_22930 at 5121.803 kb on + strand, within AO356_22930 at 5121.803 kb on + strand, within AO356_22930 at 5121.804 kb on - strand, within AO356_22930 at 5121.804 kb on - strand, within AO356_22930 at 5122.040 kb on + strand, within AO356_22930 at 5122.041 kb on - strand, within AO356_22930 at 5122.083 kb on - strand, within AO356_22930 at 5122.094 kb on + strand, within AO356_22930 at 5122.173 kb on - strand, within AO356_22930
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0032 mg/ml remove 5,118,255 + AO356_22920 0.43 -0.8 5,118,256 - AO356_22920 0.43 +1.3 5,118,256 - AO356_22920 0.43 +1.1 5,118,351 - AO356_22920 0.58 -0.7 5,118,351 - AO356_22920 0.58 +0.1 5,118,471 - AO356_22920 0.76 +1.0 5,118,471 - AO356_22920 0.76 -1.0 5,118,572 + +0.0 5,118,572 + -0.1 5,118,572 + +0.1 5,118,573 - -0.7 5,118,660 + -0.4 5,118,661 - -0.7 5,118,745 + +0.0 5,118,745 + +1.1 5,118,882 - -1.7 5,118,882 - +0.7 5,119,076 + +0.5 5,119,182 + -0.3 5,119,183 - -1.2 5,119,211 + -0.1 5,119,262 + +0.7 5,119,262 + -1.6 5,119,262 + -0.4 5,119,263 - +1.1 5,119,289 - +0.3 5,119,416 - AO356_22925 0.11 +0.1 5,119,562 + AO356_22925 0.18 +0.6 5,119,562 + AO356_22925 0.18 -0.5 5,119,562 + AO356_22925 0.18 -0.1 5,119,563 - AO356_22925 0.18 +1.8 5,119,563 - AO356_22925 0.18 -0.4 5,119,563 - AO356_22925 0.18 +0.1 5,119,763 + AO356_22925 0.27 -0.0 5,120,420 + AO356_22925 0.59 +1.1 5,120,420 + AO356_22925 0.59 +1.7 5,120,421 - AO356_22925 0.59 -2.2 5,120,421 - AO356_22925 0.59 +0.7 5,120,421 - AO356_22925 0.59 -0.1 5,120,421 - AO356_22925 0.59 +0.6 5,120,553 - AO356_22925 0.65 +0.7 5,120,739 - AO356_22925 0.74 +0.4 5,120,739 - AO356_22925 0.74 -0.2 5,120,753 - AO356_22925 0.75 +0.9 5,120,842 + AO356_22925 0.79 -0.6 5,120,842 + AO356_22925 0.79 -0.1 5,120,843 - AO356_22925 0.79 +0.0 5,120,843 - AO356_22925 0.79 -1.2 5,120,993 + AO356_22925 0.86 +0.1 5,120,993 + AO356_22925 0.86 +0.4 5,120,993 + AO356_22925 0.86 +0.3 5,121,197 + +0.1 5,121,197 + -0.0 5,121,384 + -0.1 5,121,384 + -0.5 5,121,384 + -0.7 5,121,385 - -0.4 5,121,385 - +0.4 5,121,673 - AO356_22930 0.36 -0.3 5,121,673 - AO356_22930 0.36 +0.4 5,121,673 - AO356_22930 0.36 -0.4 5,121,803 + AO356_22930 0.47 -1.6 5,121,803 + AO356_22930 0.47 -0.8 5,121,803 + AO356_22930 0.47 -0.2 5,121,803 + AO356_22930 0.47 -0.7 5,121,804 - AO356_22930 0.47 +0.6 5,121,804 - AO356_22930 0.47 -0.9 5,122,040 + AO356_22930 0.69 +0.7 5,122,041 - AO356_22930 0.69 +0.0 5,122,083 - AO356_22930 0.73 +0.3 5,122,094 + AO356_22930 0.74 +1.5 5,122,173 - AO356_22930 0.81 +0.1
Or see this region's nucleotide sequence