Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18810

Experiment: Cisplatin 0.0032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_18805 and AO356_18810 are separated by 303 nucleotidesAO356_18810 and AO356_18815 are separated by 526 nucleotides AO356_18805: AO356_18805 - magnesium transporter, at 4,222,504 to 4,223,946 _18805 AO356_18810: AO356_18810 - DNA-binding protein, at 4,224,250 to 4,224,576 _18810 AO356_18815: AO356_18815 - tRNA-Arg, at 4,225,103 to 4,225,179 _18815 Position (kb) 4224 4225Strain fitness (log2 ratio) -2 -1 0 1 2at 4224.107 kb on + strandat 4224.274 kb on + strandat 4224.274 kb on + strandat 4224.274 kb on + strandat 4224.274 kb on + strandat 4224.274 kb on + strandat 4224.275 kb on - strandat 4224.275 kb on - strandat 4224.275 kb on - strandat 4224.275 kb on - strandat 4224.275 kb on - strandat 4224.474 kb on + strand, within AO356_18810at 4224.520 kb on + strand, within AO356_18810at 4224.520 kb on + strand, within AO356_18810at 4224.521 kb on - strand, within AO356_18810at 4224.521 kb on - strand, within AO356_18810at 4224.521 kb on - strand, within AO356_18810at 4224.521 kb on - strand, within AO356_18810at 4224.576 kb on + strandat 4224.580 kb on + strandat 4224.580 kb on + strandat 4224.581 kb on - strandat 4224.581 kb on - strandat 4224.581 kb on - strandat 4224.581 kb on - strandat 4224.593 kb on - strandat 4224.635 kb on + strandat 4224.674 kb on + strandat 4224.675 kb on - strandat 4224.675 kb on - strandat 4224.897 kb on + strandat 4224.897 kb on + strandat 4224.897 kb on + strandat 4224.897 kb on + strandat 4224.898 kb on - strandat 4224.898 kb on - strandat 4224.899 kb on + strandat 4224.899 kb on + strandat 4224.899 kb on + strandat 4224.900 kb on - strandat 4224.904 kb on + strandat 4224.905 kb on - strandat 4224.927 kb on - strandat 4224.927 kb on - strandat 4224.931 kb on + strandat 4224.931 kb on + strandat 4224.931 kb on + strandat 4224.932 kb on - strandat 4224.932 kb on - strandat 4224.932 kb on - strandat 4224.999 kb on + strandat 4224.999 kb on + strandat 4224.999 kb on + strandat 4224.999 kb on + strandat 4224.999 kb on + strandat 4225.000 kb on - strandat 4225.010 kb on + strandat 4225.011 kb on - strandat 4225.011 kb on - strandat 4225.011 kb on - strandat 4225.017 kb on - strandat 4225.017 kb on - strandat 4225.140 kb on - strand, within AO356_18815at 4225.140 kb on - strand, within AO356_18815at 4225.181 kb on + strandat 4225.182 kb on - strandat 4225.182 kb on - strandat 4225.182 kb on - strandat 4225.184 kb on - strandat 4225.184 kb on - strandat 4225.184 kb on - strandat 4225.334 kb on + strandat 4225.335 kb on - strandat 4225.343 kb on + strandat 4225.343 kb on + strandat 4225.344 kb on - strandat 4225.344 kb on - strandat 4225.344 kb on - strandat 4225.344 kb on - strandat 4225.378 kb on + strandat 4225.379 kb on - strandat 4225.394 kb on + strandat 4225.395 kb on - strandat 4225.401 kb on + strandat 4225.402 kb on - strandat 4225.402 kb on - strandat 4225.402 kb on - strandat 4225.429 kb on + strandat 4225.429 kb on + strandat 4225.429 kb on + strandat 4225.429 kb on + strandat 4225.429 kb on + strandat 4225.430 kb on - strandat 4225.430 kb on - strandat 4225.430 kb on - strandat 4225.430 kb on - strandat 4225.430 kb on - strandat 4225.430 kb on - strandat 4225.430 kb on - strandat 4225.433 kb on + strandat 4225.433 kb on + strandat 4225.434 kb on - strandat 4225.434 kb on - strandat 4225.434 kb on - strandat 4225.441 kb on + strandat 4225.441 kb on + strandat 4225.441 kb on + strandat 4225.442 kb on - strandat 4225.442 kb on - strandat 4225.442 kb on - strandat 4225.442 kb on - strandat 4225.442 kb on - strandat 4225.442 kb on - strandat 4225.445 kb on + strandat 4225.445 kb on + strandat 4225.445 kb on + strandat 4225.445 kb on + strandat 4225.445 kb on + strandat 4225.445 kb on + strandat 4225.445 kb on + strandat 4225.445 kb on + strandat 4225.446 kb on - strandat 4225.446 kb on - strandat 4225.446 kb on - strandat 4225.446 kb on - strandat 4225.550 kb on + strandat 4225.551 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0032 mg/ml
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4,224,107 + -2.2
4,224,274 + +2.4
4,224,274 + +0.2
4,224,274 + +0.5
4,224,274 + +0.4
4,224,274 + +0.8
4,224,275 - -0.0
4,224,275 - -1.0
4,224,275 - -1.6
4,224,275 - +0.1
4,224,275 - +0.6
4,224,474 + AO356_18810 0.69 -1.4
4,224,520 + AO356_18810 0.83 -1.5
4,224,520 + AO356_18810 0.83 -0.5
4,224,521 - AO356_18810 0.83 -0.1
4,224,521 - AO356_18810 0.83 +0.6
4,224,521 - AO356_18810 0.83 -0.5
4,224,521 - AO356_18810 0.83 +0.4
4,224,576 + -0.5
4,224,580 + -0.1
4,224,580 + +0.6
4,224,581 - -1.1
4,224,581 - -0.0
4,224,581 - -0.7
4,224,581 - -0.6
4,224,593 - +0.9
4,224,635 + -0.5
4,224,674 + -1.2
4,224,675 - +0.6
4,224,675 - +0.4
4,224,897 + -0.2
4,224,897 + +1.5
4,224,897 + -1.8
4,224,897 + +0.5
4,224,898 - +0.1
4,224,898 - -0.1
4,224,899 + +0.1
4,224,899 + +0.6
4,224,899 + +0.1
4,224,900 - -0.2
4,224,904 + +1.0
4,224,905 - -0.1
4,224,927 - -0.9
4,224,927 - -0.8
4,224,931 + +0.4
4,224,931 + -0.5
4,224,931 + +0.5
4,224,932 - -1.0
4,224,932 - -0.4
4,224,932 - -0.1
4,224,999 + -0.1
4,224,999 + +2.4
4,224,999 + +1.4
4,224,999 + -0.5
4,224,999 + -0.3
4,225,000 - +0.0
4,225,010 + +0.7
4,225,011 - +0.3
4,225,011 - -1.2
4,225,011 - +0.2
4,225,017 - -1.1
4,225,017 - +0.4
4,225,140 - AO356_18815 0.48 -1.6
4,225,140 - AO356_18815 0.48 -1.5
4,225,181 + +0.7
4,225,182 - +0.8
4,225,182 - -0.9
4,225,182 - +0.4
4,225,184 - +0.4
4,225,184 - -0.6
4,225,184 - -0.3
4,225,334 + -0.3
4,225,335 - +0.7
4,225,343 + +0.4
4,225,343 + +0.3
4,225,344 - -0.5
4,225,344 - -0.8
4,225,344 - +0.8
4,225,344 - +0.4
4,225,378 + +0.1
4,225,379 - +0.6
4,225,394 + +1.1
4,225,395 - +0.3
4,225,401 + -0.1
4,225,402 - -1.3
4,225,402 - +0.6
4,225,402 - -1.3
4,225,429 + +0.2
4,225,429 + +0.3
4,225,429 + +1.4
4,225,429 + -1.2
4,225,429 + -1.6
4,225,430 - +1.1
4,225,430 - +0.2
4,225,430 - -0.7
4,225,430 - -0.0
4,225,430 - +0.8
4,225,430 - +0.4
4,225,430 - +1.6
4,225,433 + -1.1
4,225,433 + +0.6
4,225,434 - +1.0
4,225,434 - -0.7
4,225,434 - +0.2
4,225,441 + -1.0
4,225,441 + -0.9
4,225,441 + -1.4
4,225,442 - +0.3
4,225,442 - +0.4
4,225,442 - +1.2
4,225,442 - -0.1
4,225,442 - +0.9
4,225,442 - -0.3
4,225,445 + +0.8
4,225,445 + -0.2
4,225,445 + +0.8
4,225,445 + +1.0
4,225,445 + -0.5
4,225,445 + -0.4
4,225,445 + +0.1
4,225,445 + -0.5
4,225,446 - -0.3
4,225,446 - -0.9
4,225,446 - +1.1
4,225,446 - -0.3
4,225,550 + -1.3
4,225,551 - +0.1

Or see this region's nucleotide sequence