Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_13490

Experiment: Cisplatin 0.0032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_13480 and AO356_13485 are separated by 48 nucleotidesAO356_13485 and AO356_13490 are separated by 10 nucleotidesAO356_13490 and AO356_13495 are separated by 158 nucleotides AO356_13480: AO356_13480 - pilus assembly protein PilG, at 3,054,562 to 3,054,990 _13480 AO356_13485: AO356_13485 - chemotaxis protein CheY, at 3,055,039 to 3,055,404 _13485 AO356_13490: AO356_13490 - protein PilI, at 3,055,415 to 3,055,954 _13490 AO356_13495: AO356_13495 - chemotaxis protein, at 3,056,113 to 3,058,176 _13495 Position (kb) 3055 3056Strain fitness (log2 ratio) -2 -1 0 1at 3054.447 kb on + strandat 3054.447 kb on + strandat 3054.447 kb on + strandat 3054.448 kb on - strandat 3054.448 kb on - strandat 3054.448 kb on - strandat 3054.470 kb on + strandat 3054.470 kb on + strandat 3054.471 kb on - strandat 3054.576 kb on + strandat 3054.576 kb on + strandat 3054.576 kb on + strandat 3054.576 kb on + strandat 3054.775 kb on + strand, within AO356_13480at 3054.938 kb on + strand, within AO356_13480at 3054.938 kb on + strand, within AO356_13480at 3054.988 kb on + strandat 3054.989 kb on - strandat 3054.989 kb on - strandat 3054.989 kb on - strandat 3055.081 kb on + strand, within AO356_13485at 3055.082 kb on - strand, within AO356_13485at 3055.082 kb on - strand, within AO356_13485at 3055.082 kb on - strand, within AO356_13485at 3055.194 kb on + strand, within AO356_13485at 3055.339 kb on + strand, within AO356_13485at 3055.553 kb on + strand, within AO356_13490at 3055.553 kb on + strand, within AO356_13490at 3055.553 kb on + strand, within AO356_13490at 3055.553 kb on + strand, within AO356_13490at 3055.554 kb on - strand, within AO356_13490at 3055.554 kb on - strand, within AO356_13490at 3055.554 kb on - strand, within AO356_13490at 3055.554 kb on - strand, within AO356_13490at 3055.554 kb on - strand, within AO356_13490at 3055.554 kb on - strand, within AO356_13490at 3056.095 kb on + strandat 3056.227 kb on + strandat 3056.227 kb on + strandat 3056.228 kb on - strandat 3056.228 kb on - strandat 3056.248 kb on + strandat 3056.248 kb on + strandat 3056.249 kb on - strandat 3056.260 kb on + strandat 3056.260 kb on + strandat 3056.260 kb on + strandat 3056.260 kb on + strandat 3056.260 kb on + strandat 3056.260 kb on + strandat 3056.260 kb on + strandat 3056.261 kb on - strandat 3056.261 kb on - strandat 3056.261 kb on - strandat 3056.261 kb on - strandat 3056.261 kb on - strandat 3056.261 kb on - strandat 3056.261 kb on - strandat 3056.261 kb on - strandat 3056.261 kb on - strandat 3056.261 kb on - strandat 3056.261 kb on - strandat 3056.700 kb on + strand, within AO356_13495at 3056.742 kb on + strand, within AO356_13495at 3056.742 kb on + strand, within AO356_13495at 3056.952 kb on + strand, within AO356_13495at 3056.952 kb on + strand, within AO356_13495at 3056.953 kb on - strand, within AO356_13495

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0032 mg/ml
remove
3,054,447 + -0.1
3,054,447 + -0.6
3,054,447 + -1.0
3,054,448 - +0.6
3,054,448 - +0.3
3,054,448 - +0.4
3,054,470 + +0.0
3,054,470 + +0.4
3,054,471 - +0.0
3,054,576 + +0.0
3,054,576 + -0.8
3,054,576 + +0.8
3,054,576 + -0.7
3,054,775 + AO356_13480 0.50 -0.1
3,054,938 + AO356_13480 0.88 -0.7
3,054,938 + AO356_13480 0.88 -0.3
3,054,988 + +1.1
3,054,989 - -1.0
3,054,989 - -0.0
3,054,989 - +0.1
3,055,081 + AO356_13485 0.11 -0.3
3,055,082 - AO356_13485 0.12 +0.6
3,055,082 - AO356_13485 0.12 +0.6
3,055,082 - AO356_13485 0.12 -2.1
3,055,194 + AO356_13485 0.42 +0.4
3,055,339 + AO356_13485 0.82 +0.1
3,055,553 + AO356_13490 0.26 +0.0
3,055,553 + AO356_13490 0.26 +1.6
3,055,553 + AO356_13490 0.26 +0.0
3,055,553 + AO356_13490 0.26 +1.0
3,055,554 - AO356_13490 0.26 +0.7
3,055,554 - AO356_13490 0.26 -1.6
3,055,554 - AO356_13490 0.26 -1.6
3,055,554 - AO356_13490 0.26 +0.1
3,055,554 - AO356_13490 0.26 -2.0
3,055,554 - AO356_13490 0.26 -0.1
3,056,095 + +0.6
3,056,227 + +1.2
3,056,227 + -1.0
3,056,228 - -0.7
3,056,228 - +0.3
3,056,248 + -0.4
3,056,248 + -1.2
3,056,249 - -0.2
3,056,260 + +1.6
3,056,260 + +0.7
3,056,260 + +0.4
3,056,260 + +0.1
3,056,260 + -0.2
3,056,260 + +1.2
3,056,260 + +0.1
3,056,261 - -1.1
3,056,261 - +1.0
3,056,261 - -1.0
3,056,261 - +0.4
3,056,261 - -0.1
3,056,261 - -1.0
3,056,261 - -0.5
3,056,261 - +1.2
3,056,261 - -1.2
3,056,261 - +0.5
3,056,261 - +0.6
3,056,700 + AO356_13495 0.28 -0.9
3,056,742 + AO356_13495 0.30 -0.7
3,056,742 + AO356_13495 0.30 +0.1
3,056,952 + AO356_13495 0.41 +0.3
3,056,952 + AO356_13495 0.41 +0.0
3,056,953 - AO356_13495 0.41 -2.4

Or see this region's nucleotide sequence