Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_13055

Experiment: Cisplatin 0.0032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_13045 and AO356_13050 are separated by 68 nucleotidesAO356_13050 and AO356_13055 are separated by 9 nucleotidesAO356_13055 and AO356_13060 are separated by 189 nucleotides AO356_13045: AO356_13045 - ribonucleotide reductase, at 2,968,100 to 2,968,417 _13045 AO356_13050: AO356_13050 - hypothetical protein, at 2,968,486 to 2,968,935 _13050 AO356_13055: AO356_13055 - protease, at 2,968,945 to 2,969,865 _13055 AO356_13060: AO356_13060 - type II secretion system protein E, at 2,970,055 to 2,971,839 _13060 Position (kb) 2968 2969 2970Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2968.087 kb on + strandat 2968.209 kb on + strand, within AO356_13045at 2968.209 kb on + strand, within AO356_13045at 2968.210 kb on - strand, within AO356_13045at 2968.210 kb on - strandat 2968.210 kb on - strand, within AO356_13045at 2968.299 kb on + strand, within AO356_13045at 2968.299 kb on + strand, within AO356_13045at 2968.299 kb on + strand, within AO356_13045at 2968.299 kb on + strand, within AO356_13045at 2968.299 kb on + strand, within AO356_13045at 2968.299 kb on + strand, within AO356_13045at 2968.300 kb on - strand, within AO356_13045at 2968.300 kb on - strand, within AO356_13045at 2968.300 kb on - strand, within AO356_13045at 2968.300 kb on - strand, within AO356_13045at 2968.300 kb on - strand, within AO356_13045at 2968.300 kb on - strand, within AO356_13045at 2968.300 kb on - strand, within AO356_13045at 2968.300 kb on - strand, within AO356_13045at 2968.300 kb on - strand, within AO356_13045at 2968.389 kb on - strandat 2968.389 kb on - strandat 2968.420 kb on + strandat 2968.420 kb on + strandat 2968.420 kb on + strandat 2968.420 kb on + strandat 2968.420 kb on + strandat 2968.420 kb on + strandat 2968.420 kb on + strandat 2968.420 kb on + strandat 2968.420 kb on + strandat 2968.420 kb on + strandat 2968.420 kb on + strandat 2968.420 kb on + strandat 2968.420 kb on + strandat 2968.420 kb on + strandat 2968.420 kb on + strandat 2968.421 kb on - strandat 2968.421 kb on - strandat 2968.421 kb on - strandat 2968.421 kb on - strandat 2968.421 kb on - strandat 2968.421 kb on - strandat 2968.421 kb on - strandat 2968.421 kb on - strandat 2968.421 kb on - strandat 2968.421 kb on - strandat 2968.438 kb on + strandat 2968.438 kb on + strandat 2968.439 kb on - strandat 2968.442 kb on + strandat 2968.442 kb on + strandat 2968.442 kb on + strandat 2968.442 kb on + strandat 2968.442 kb on + strandat 2968.442 kb on + strandat 2968.442 kb on + strandat 2968.442 kb on + strandat 2968.442 kb on + strandat 2968.443 kb on - strandat 2968.443 kb on - strandat 2968.443 kb on - strandat 2968.443 kb on - strandat 2968.443 kb on - strandat 2968.443 kb on - strandat 2968.443 kb on - strandat 2968.443 kb on - strandat 2968.443 kb on - strandat 2968.455 kb on + strandat 2968.455 kb on + strandat 2968.455 kb on + strandat 2968.456 kb on - strandat 2968.456 kb on - strandat 2968.456 kb on - strandat 2968.724 kb on + strand, within AO356_13050at 2968.724 kb on + strand, within AO356_13050at 2968.724 kb on + strand, within AO356_13050at 2968.725 kb on - strand, within AO356_13050at 2968.725 kb on - strand, within AO356_13050at 2968.725 kb on - strand, within AO356_13050at 2968.725 kb on - strand, within AO356_13050at 2968.844 kb on + strand, within AO356_13050at 2968.845 kb on - strand, within AO356_13050at 2968.845 kb on - strand, within AO356_13050at 2968.907 kb on + strandat 2968.935 kb on + strandat 2968.935 kb on + strandat 2968.935 kb on + strandat 2968.935 kb on + strandat 2968.935 kb on + strandat 2968.935 kb on + strandat 2968.935 kb on + strandat 2968.936 kb on - strandat 2968.936 kb on - strandat 2968.936 kb on - strandat 2968.936 kb on - strandat 2968.936 kb on - strandat 2968.936 kb on - strandat 2969.084 kb on + strand, within AO356_13055at 2969.084 kb on + strand, within AO356_13055at 2969.084 kb on + strand, within AO356_13055at 2969.084 kb on + strand, within AO356_13055at 2969.084 kb on + strand, within AO356_13055at 2969.084 kb on + strand, within AO356_13055at 2969.085 kb on - strand, within AO356_13055at 2969.085 kb on - strand, within AO356_13055at 2969.085 kb on - strand, within AO356_13055at 2969.085 kb on - strand, within AO356_13055at 2969.102 kb on + strand, within AO356_13055at 2969.102 kb on + strand, within AO356_13055at 2969.102 kb on + strand, within AO356_13055at 2969.102 kb on + strand, within AO356_13055at 2969.102 kb on + strand, within AO356_13055at 2969.102 kb on + strand, within AO356_13055at 2969.103 kb on - strand, within AO356_13055at 2969.103 kb on - strand, within AO356_13055at 2969.103 kb on - strand, within AO356_13055at 2969.103 kb on - strand, within AO356_13055at 2969.103 kb on - strand, within AO356_13055at 2969.319 kb on + strand, within AO356_13055at 2969.319 kb on + strand, within AO356_13055at 2969.319 kb on + strand, within AO356_13055at 2969.319 kb on + strand, within AO356_13055at 2969.320 kb on - strand, within AO356_13055at 2969.320 kb on - strand, within AO356_13055at 2969.320 kb on - strand, within AO356_13055at 2969.320 kb on - strand, within AO356_13055at 2969.553 kb on + strand, within AO356_13055at 2969.553 kb on + strand, within AO356_13055at 2969.554 kb on - strand, within AO356_13055at 2969.554 kb on - strand, within AO356_13055at 2969.618 kb on - strand, within AO356_13055at 2969.751 kb on - strand, within AO356_13055at 2969.751 kb on - strand, within AO356_13055at 2969.751 kb on - strand, within AO356_13055at 2969.842 kb on + strandat 2969.843 kb on - strandat 2969.843 kb on - strandat 2969.843 kb on - strandat 2969.848 kb on + strandat 2969.849 kb on - strandat 2969.849 kb on - strandat 2969.849 kb on - strandat 2969.849 kb on - strandat 2969.911 kb on + strandat 2969.912 kb on - strandat 2969.912 kb on - strandat 2969.928 kb on - strandat 2970.056 kb on + strandat 2970.056 kb on + strandat 2970.056 kb on + strandat 2970.056 kb on + strandat 2970.056 kb on + strandat 2970.056 kb on + strandat 2970.056 kb on + strandat 2970.056 kb on + strandat 2970.056 kb on + strandat 2970.056 kb on + strandat 2970.056 kb on + strandat 2970.056 kb on + strandat 2970.057 kb on - strandat 2970.057 kb on - strandat 2970.057 kb on - strandat 2970.057 kb on - strandat 2970.057 kb on - strandat 2970.057 kb on - strandat 2970.057 kb on - strandat 2970.057 kb on - strandat 2970.057 kb on - strandat 2970.057 kb on - strandat 2970.057 kb on - strandat 2970.245 kb on + strand, within AO356_13060at 2970.453 kb on - strand, within AO356_13060at 2970.761 kb on + strand, within AO356_13060at 2970.761 kb on + strand, within AO356_13060at 2970.761 kb on + strand, within AO356_13060at 2970.761 kb on + strand, within AO356_13060at 2970.762 kb on - strand, within AO356_13060at 2970.762 kb on - strand, within AO356_13060at 2970.789 kb on + strand, within AO356_13060at 2970.789 kb on + strand, within AO356_13060at 2970.789 kb on + strand, within AO356_13060at 2970.790 kb on - strand, within AO356_13060

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0032 mg/ml
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2,968,087 + -0.4
2,968,209 + AO356_13045 0.34 -0.3
2,968,209 + AO356_13045 0.34 -0.2
2,968,210 - AO356_13045 0.35 +0.6
2,968,210 - +3.6
2,968,210 - AO356_13045 0.35 +0.3
2,968,299 + AO356_13045 0.63 +0.4
2,968,299 + AO356_13045 0.63 -1.2
2,968,299 + AO356_13045 0.63 -0.7
2,968,299 + AO356_13045 0.63 +0.4
2,968,299 + AO356_13045 0.63 +0.3
2,968,299 + AO356_13045 0.63 +0.2
2,968,300 - AO356_13045 0.63 +0.2
2,968,300 - AO356_13045 0.63 -0.8
2,968,300 - AO356_13045 0.63 -0.9
2,968,300 - AO356_13045 0.63 +0.1
2,968,300 - AO356_13045 0.63 +0.4
2,968,300 - AO356_13045 0.63 -0.1
2,968,300 - AO356_13045 0.63 -0.6
2,968,300 - AO356_13045 0.63 +0.6
2,968,300 - AO356_13045 0.63 -0.2
2,968,389 - +0.4
2,968,389 - -0.2
2,968,420 + -0.1
2,968,420 + +0.6
2,968,420 + -0.5
2,968,420 + +0.7
2,968,420 + -0.7
2,968,420 + -0.9
2,968,420 + +0.5
2,968,420 + +0.3
2,968,420 + +0.5
2,968,420 + -0.1
2,968,420 + +0.0
2,968,420 + +2.2
2,968,420 + -0.9
2,968,420 + +0.0
2,968,420 + +0.2
2,968,421 - +0.8
2,968,421 - +0.3
2,968,421 - -1.5
2,968,421 - -0.3
2,968,421 - +0.3
2,968,421 - -0.0
2,968,421 - -0.1
2,968,421 - -0.1
2,968,421 - +0.1
2,968,421 - -2.5
2,968,438 + -0.4
2,968,438 + -0.8
2,968,439 - +0.8
2,968,442 + +0.2
2,968,442 + -0.7
2,968,442 + +0.7
2,968,442 + +0.2
2,968,442 + +1.3
2,968,442 + +2.2
2,968,442 + +0.6
2,968,442 + +0.3
2,968,442 + -1.3
2,968,443 - +1.1
2,968,443 - +0.2
2,968,443 - +0.8
2,968,443 - -0.4
2,968,443 - +0.4
2,968,443 - -1.1
2,968,443 - -0.2
2,968,443 - -0.5
2,968,443 - +0.8
2,968,455 + +0.7
2,968,455 + +0.5
2,968,455 + -0.5
2,968,456 - -0.3
2,968,456 - +0.2
2,968,456 - +0.8
2,968,724 + AO356_13050 0.53 +0.1
2,968,724 + AO356_13050 0.53 +1.2
2,968,724 + AO356_13050 0.53 -0.4
2,968,725 - AO356_13050 0.53 +0.3
2,968,725 - AO356_13050 0.53 +0.3
2,968,725 - AO356_13050 0.53 +1.0
2,968,725 - AO356_13050 0.53 +0.7
2,968,844 + AO356_13050 0.80 +0.1
2,968,845 - AO356_13050 0.80 +0.2
2,968,845 - AO356_13050 0.80 +1.1
2,968,907 + +0.3
2,968,935 + +0.4
2,968,935 + -0.0
2,968,935 + -0.1
2,968,935 + -1.2
2,968,935 + -0.5
2,968,935 + -0.8
2,968,935 + -0.4
2,968,936 - -0.9
2,968,936 - -0.8
2,968,936 - -0.0
2,968,936 - -0.4
2,968,936 - +0.2
2,968,936 - +0.0
2,969,084 + AO356_13055 0.15 +0.2
2,969,084 + AO356_13055 0.15 +1.3
2,969,084 + AO356_13055 0.15 -1.2
2,969,084 + AO356_13055 0.15 -0.2
2,969,084 + AO356_13055 0.15 -1.0
2,969,084 + AO356_13055 0.15 -0.1
2,969,085 - AO356_13055 0.15 -0.3
2,969,085 - AO356_13055 0.15 -0.5
2,969,085 - AO356_13055 0.15 -0.1
2,969,085 - AO356_13055 0.15 -0.2
2,969,102 + AO356_13055 0.17 +0.8
2,969,102 + AO356_13055 0.17 -1.6
2,969,102 + AO356_13055 0.17 +1.2
2,969,102 + AO356_13055 0.17 -0.1
2,969,102 + AO356_13055 0.17 +0.8
2,969,102 + AO356_13055 0.17 +0.9
2,969,103 - AO356_13055 0.17 +0.0
2,969,103 - AO356_13055 0.17 -0.1
2,969,103 - AO356_13055 0.17 -0.2
2,969,103 - AO356_13055 0.17 +0.6
2,969,103 - AO356_13055 0.17 +0.3
2,969,319 + AO356_13055 0.41 -0.6
2,969,319 + AO356_13055 0.41 +1.4
2,969,319 + AO356_13055 0.41 +0.0
2,969,319 + AO356_13055 0.41 +1.3
2,969,320 - AO356_13055 0.41 +0.3
2,969,320 - AO356_13055 0.41 -0.5
2,969,320 - AO356_13055 0.41 +0.3
2,969,320 - AO356_13055 0.41 -0.1
2,969,553 + AO356_13055 0.66 -0.8
2,969,553 + AO356_13055 0.66 +0.3
2,969,554 - AO356_13055 0.66 +0.1
2,969,554 - AO356_13055 0.66 +0.8
2,969,618 - AO356_13055 0.73 +0.8
2,969,751 - AO356_13055 0.88 -0.7
2,969,751 - AO356_13055 0.88 -0.7
2,969,751 - AO356_13055 0.88 +0.5
2,969,842 + -0.7
2,969,843 - -0.4
2,969,843 - -0.2
2,969,843 - +0.6
2,969,848 + +0.0
2,969,849 - +0.7
2,969,849 - -0.5
2,969,849 - -1.0
2,969,849 - -0.1
2,969,911 + -0.3
2,969,912 - -0.0
2,969,912 - -0.9
2,969,928 - -0.1
2,970,056 + +0.6
2,970,056 + -1.0
2,970,056 + +0.9
2,970,056 + +0.1
2,970,056 + +0.4
2,970,056 + +0.7
2,970,056 + +0.5
2,970,056 + -0.8
2,970,056 + -0.6
2,970,056 + -0.8
2,970,056 + -0.2
2,970,056 + +0.9
2,970,057 - -0.6
2,970,057 - +1.0
2,970,057 - -0.1
2,970,057 - +0.1
2,970,057 - -0.2
2,970,057 - -0.4
2,970,057 - +0.4
2,970,057 - +0.0
2,970,057 - +0.3
2,970,057 - +1.0
2,970,057 - +1.0
2,970,245 + AO356_13060 0.11 -0.4
2,970,453 - AO356_13060 0.22 -1.7
2,970,761 + AO356_13060 0.40 -0.0
2,970,761 + AO356_13060 0.40 -0.2
2,970,761 + AO356_13060 0.40 +1.0
2,970,761 + AO356_13060 0.40 +0.9
2,970,762 - AO356_13060 0.40 +1.7
2,970,762 - AO356_13060 0.40 -0.2
2,970,789 + AO356_13060 0.41 -0.2
2,970,789 + AO356_13060 0.41 -0.3
2,970,789 + AO356_13060 0.41 -1.7
2,970,790 - AO356_13060 0.41 +0.2

Or see this region's nucleotide sequence