Experiment: Cisplatin 0.0032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_05350 and AO356_05355 overlap by 4 nucleotides AO356_05355 and AO356_05360 overlap by 4 nucleotides AO356_05360 and AO356_05365 are separated by 122 nucleotides
AO356_05350: AO356_05350 - hypothetical protein, at 1,203,901 to 1,204,770
_05350
AO356_05355: AO356_05355 - hypothetical protein, at 1,204,767 to 1,205,525
_05355
AO356_05360: AO356_05360 - hypothetical protein, at 1,205,522 to 1,206,001
_05360
AO356_05365: AO356_05365 - LysR family transcriptional regulator, at 1,206,124 to 1,207,038
_05365
Position (kb)
1205
1206
1207 Strain fitness (log2 ratio)
-1
0
1
2 at 1204.589 kb on + strand, within AO356_05350 at 1204.633 kb on + strand, within AO356_05350 at 1204.633 kb on + strand, within AO356_05350 at 1204.633 kb on + strand, within AO356_05350 at 1204.633 kb on + strand, within AO356_05350 at 1204.633 kb on + strand, within AO356_05350 at 1204.633 kb on + strand, within AO356_05350 at 1204.634 kb on - strand, within AO356_05350 at 1204.634 kb on - strand, within AO356_05350 at 1204.634 kb on - strand, within AO356_05350 at 1204.634 kb on - strand, within AO356_05350 at 1204.924 kb on - strand, within AO356_05355 at 1204.924 kb on - strand, within AO356_05355 at 1204.924 kb on - strand, within AO356_05355 at 1204.980 kb on + strand, within AO356_05355 at 1204.980 kb on + strand, within AO356_05355 at 1204.981 kb on - strand, within AO356_05355 at 1204.981 kb on - strand, within AO356_05355 at 1204.981 kb on - strand, within AO356_05355 at 1204.981 kb on - strand, within AO356_05355 at 1204.981 kb on - strand, within AO356_05355 at 1204.981 kb on - strand, within AO356_05355 at 1204.981 kb on - strand, within AO356_05355 at 1204.981 kb on - strand, within AO356_05355 at 1204.981 kb on - strand, within AO356_05355 at 1205.079 kb on + strand, within AO356_05355 at 1205.080 kb on - strand, within AO356_05355 at 1205.080 kb on - strand, within AO356_05355 at 1205.080 kb on - strand, within AO356_05355 at 1205.080 kb on - strand, within AO356_05355 at 1205.515 kb on + strand at 1205.515 kb on + strand at 1205.515 kb on + strand at 1205.516 kb on - strand at 1205.516 kb on - strand at 1205.516 kb on - strand at 1205.516 kb on - strand at 1205.732 kb on + strand, within AO356_05360 at 1205.732 kb on + strand, within AO356_05360 at 1205.733 kb on - strand, within AO356_05360 at 1205.930 kb on + strand, within AO356_05360 at 1205.931 kb on - strand, within AO356_05360 at 1205.931 kb on - strand, within AO356_05360 at 1205.931 kb on - strand, within AO356_05360 at 1206.062 kb on - strand at 1206.070 kb on + strand at 1206.070 kb on + strand at 1206.071 kb on - strand at 1206.071 kb on - strand at 1206.071 kb on - strand at 1206.071 kb on - strand at 1206.071 kb on - strand at 1206.071 kb on - strand at 1206.110 kb on - strand at 1206.133 kb on + strand at 1206.179 kb on + strand at 1206.236 kb on + strand, within AO356_05365 at 1206.236 kb on + strand, within AO356_05365 at 1206.236 kb on + strand, within AO356_05365 at 1206.236 kb on + strand, within AO356_05365 at 1206.236 kb on + strand, within AO356_05365 at 1206.237 kb on - strand, within AO356_05365 at 1206.237 kb on - strand, within AO356_05365 at 1206.237 kb on - strand, within AO356_05365 at 1206.314 kb on + strand, within AO356_05365 at 1206.314 kb on + strand, within AO356_05365 at 1206.315 kb on - strand, within AO356_05365 at 1206.315 kb on - strand, within AO356_05365 at 1206.431 kb on + strand, within AO356_05365 at 1206.431 kb on + strand, within AO356_05365 at 1206.431 kb on + strand, within AO356_05365 at 1206.432 kb on - strand, within AO356_05365 at 1206.456 kb on - strand, within AO356_05365 at 1206.515 kb on + strand, within AO356_05365 at 1206.516 kb on - strand, within AO356_05365 at 1206.516 kb on - strand, within AO356_05365 at 1206.528 kb on - strand, within AO356_05365 at 1206.686 kb on + strand, within AO356_05365 at 1206.687 kb on - strand, within AO356_05365 at 1206.687 kb on - strand, within AO356_05365 at 1206.753 kb on + strand, within AO356_05365 at 1206.981 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0032 mg/ml remove 1,204,589 + AO356_05350 0.79 -1.0 1,204,633 + AO356_05350 0.84 -1.1 1,204,633 + AO356_05350 0.84 +0.0 1,204,633 + AO356_05350 0.84 +0.2 1,204,633 + AO356_05350 0.84 +1.0 1,204,633 + AO356_05350 0.84 -0.9 1,204,633 + AO356_05350 0.84 -0.4 1,204,634 - AO356_05350 0.84 +0.9 1,204,634 - AO356_05350 0.84 +0.5 1,204,634 - AO356_05350 0.84 +0.7 1,204,634 - AO356_05350 0.84 +0.6 1,204,924 - AO356_05355 0.21 +0.4 1,204,924 - AO356_05355 0.21 -0.0 1,204,924 - AO356_05355 0.21 -0.0 1,204,980 + AO356_05355 0.28 -0.5 1,204,980 + AO356_05355 0.28 -0.3 1,204,981 - AO356_05355 0.28 -1.1 1,204,981 - AO356_05355 0.28 +0.4 1,204,981 - AO356_05355 0.28 +1.1 1,204,981 - AO356_05355 0.28 +0.4 1,204,981 - AO356_05355 0.28 -0.4 1,204,981 - AO356_05355 0.28 +0.7 1,204,981 - AO356_05355 0.28 +0.7 1,204,981 - AO356_05355 0.28 -0.7 1,204,981 - AO356_05355 0.28 -0.8 1,205,079 + AO356_05355 0.41 -0.6 1,205,080 - AO356_05355 0.41 -0.2 1,205,080 - AO356_05355 0.41 -1.1 1,205,080 - AO356_05355 0.41 +0.0 1,205,080 - AO356_05355 0.41 +0.2 1,205,515 + +0.8 1,205,515 + -0.2 1,205,515 + +0.4 1,205,516 - +0.3 1,205,516 - -0.5 1,205,516 - +0.0 1,205,516 - +1.5 1,205,732 + AO356_05360 0.44 +0.2 1,205,732 + AO356_05360 0.44 +0.8 1,205,733 - AO356_05360 0.44 -0.9 1,205,930 + AO356_05360 0.85 -0.6 1,205,931 - AO356_05360 0.85 -0.8 1,205,931 - AO356_05360 0.85 +0.4 1,205,931 - AO356_05360 0.85 +0.1 1,206,062 - +0.1 1,206,070 + +0.3 1,206,070 + +0.2 1,206,071 - -0.2 1,206,071 - -0.2 1,206,071 - +0.9 1,206,071 - +0.2 1,206,071 - +0.2 1,206,071 - +1.6 1,206,110 - -0.5 1,206,133 + +1.8 1,206,179 + -0.3 1,206,236 + AO356_05365 0.12 -0.9 1,206,236 + AO356_05365 0.12 -0.2 1,206,236 + AO356_05365 0.12 -0.4 1,206,236 + AO356_05365 0.12 -0.1 1,206,236 + AO356_05365 0.12 +0.1 1,206,237 - AO356_05365 0.12 +0.4 1,206,237 - AO356_05365 0.12 -0.5 1,206,237 - AO356_05365 0.12 -0.1 1,206,314 + AO356_05365 0.21 -0.8 1,206,314 + AO356_05365 0.21 -0.9 1,206,315 - AO356_05365 0.21 -0.2 1,206,315 - AO356_05365 0.21 -0.1 1,206,431 + AO356_05365 0.34 -1.3 1,206,431 + AO356_05365 0.34 -0.1 1,206,431 + AO356_05365 0.34 -0.3 1,206,432 - AO356_05365 0.34 +0.4 1,206,456 - AO356_05365 0.36 -0.2 1,206,515 + AO356_05365 0.43 +0.4 1,206,516 - AO356_05365 0.43 -0.6 1,206,516 - AO356_05365 0.43 +0.4 1,206,528 - AO356_05365 0.44 +0.4 1,206,686 + AO356_05365 0.61 -0.4 1,206,687 - AO356_05365 0.62 -0.0 1,206,687 - AO356_05365 0.62 +0.3 1,206,753 + AO356_05365 0.69 +1.6 1,206,981 + +0.8
Or see this region's nucleotide sequence