Experiment: Cisplatin 0.0032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04895 and AO356_04900 are separated by 206 nucleotides AO356_04900 and AO356_04905 are separated by 10 nucleotides AO356_04905 and AO356_04910 are separated by 12 nucleotides
AO356_04895: AO356_04895 - porin, at 1,102,088 to 1,103,341
_04895
AO356_04900: AO356_04900 - 4-carboxymuconolactone decarboxylase, at 1,103,548 to 1,103,940
_04900
AO356_04905: AO356_04905 - 3-oxoadipate enol-lactonase, at 1,103,951 to 1,104,766
_04905
AO356_04910: AO356_04910 - 3-carboxy-cis,cis-muconate cycloisomerase, at 1,104,779 to 1,106,143
_04910
Position (kb)
1103
1104 Strain fitness (log2 ratio)
-2
-1
0
1 at 1102.718 kb on + strand, within AO356_04895 at 1102.738 kb on + strand, within AO356_04895 at 1102.779 kb on - strand, within AO356_04895 at 1102.779 kb on - strand, within AO356_04895 at 1102.779 kb on - strand, within AO356_04895 at 1103.210 kb on + strand, within AO356_04895 at 1103.211 kb on - strand, within AO356_04895 at 1103.211 kb on - strand, within AO356_04895 at 1103.212 kb on + strand, within AO356_04895 at 1103.213 kb on - strand, within AO356_04895 at 1103.257 kb on + strand at 1103.280 kb on - strand at 1103.280 kb on - strand at 1103.280 kb on - strand at 1103.321 kb on + strand at 1103.339 kb on + strand at 1103.339 kb on + strand at 1103.339 kb on + strand at 1103.340 kb on - strand at 1103.365 kb on + strand at 1103.366 kb on - strand at 1103.549 kb on + strand at 1103.549 kb on + strand at 1103.550 kb on - strand at 1103.550 kb on - strand at 1103.630 kb on + strand, within AO356_04900 at 1103.630 kb on + strand, within AO356_04900 at 1103.631 kb on - strand, within AO356_04900 at 1103.631 kb on - strand, within AO356_04900 at 1103.742 kb on + strand, within AO356_04900 at 1103.767 kb on - strand, within AO356_04900 at 1103.903 kb on - strand at 1103.921 kb on + strand at 1103.921 kb on + strand at 1104.036 kb on + strand, within AO356_04905 at 1104.036 kb on + strand, within AO356_04905 at 1104.037 kb on - strand, within AO356_04905 at 1104.491 kb on - strand, within AO356_04905 at 1104.729 kb on + strand at 1104.729 kb on + strand at 1104.730 kb on - strand at 1104.843 kb on + strand at 1104.843 kb on + strand at 1104.843 kb on + strand at 1104.844 kb on - strand at 1104.926 kb on + strand, within AO356_04910 at 1104.926 kb on + strand, within AO356_04910 at 1104.926 kb on + strand, within AO356_04910 at 1104.927 kb on - strand, within AO356_04910 at 1104.927 kb on - strand, within AO356_04910
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0032 mg/ml remove 1,102,718 + AO356_04895 0.50 +0.5 1,102,738 + AO356_04895 0.52 +0.3 1,102,779 - AO356_04895 0.55 -0.3 1,102,779 - AO356_04895 0.55 +0.3 1,102,779 - AO356_04895 0.55 -0.3 1,103,210 + AO356_04895 0.89 +0.6 1,103,211 - AO356_04895 0.90 -0.5 1,103,211 - AO356_04895 0.90 -0.9 1,103,212 + AO356_04895 0.90 +0.3 1,103,213 - AO356_04895 0.90 +0.7 1,103,257 + +0.6 1,103,280 - -0.1 1,103,280 - -0.1 1,103,280 - -0.5 1,103,321 + -0.0 1,103,339 + +0.5 1,103,339 + +0.1 1,103,339 + -0.8 1,103,340 - -1.0 1,103,365 + +0.8 1,103,366 - +0.4 1,103,549 + +0.4 1,103,549 + -0.0 1,103,550 - -0.0 1,103,550 - -0.4 1,103,630 + AO356_04900 0.21 -0.8 1,103,630 + AO356_04900 0.21 +0.7 1,103,631 - AO356_04900 0.21 -0.3 1,103,631 - AO356_04900 0.21 +0.2 1,103,742 + AO356_04900 0.49 +1.4 1,103,767 - AO356_04900 0.56 +0.2 1,103,903 - -0.7 1,103,921 + -0.1 1,103,921 + +0.7 1,104,036 + AO356_04905 0.10 +0.4 1,104,036 + AO356_04905 0.10 -1.0 1,104,037 - AO356_04905 0.11 -1.9 1,104,491 - AO356_04905 0.66 -1.5 1,104,729 + -0.2 1,104,729 + -0.3 1,104,730 - -0.8 1,104,843 + -1.5 1,104,843 + +1.4 1,104,843 + -0.3 1,104,844 - -0.5 1,104,926 + AO356_04910 0.11 +0.2 1,104,926 + AO356_04910 0.11 +0.5 1,104,926 + AO356_04910 0.11 +0.9 1,104,927 - AO356_04910 0.11 -0.2 1,104,927 - AO356_04910 0.11 +0.4
Or see this region's nucleotide sequence