Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04895

Experiment: Cisplatin 0.0032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04895 and AO356_04900 are separated by 206 nucleotidesAO356_04900 and AO356_04905 are separated by 10 nucleotides AO356_04895: AO356_04895 - porin, at 1,102,088 to 1,103,341 _04895 AO356_04900: AO356_04900 - 4-carboxymuconolactone decarboxylase, at 1,103,548 to 1,103,940 _04900 AO356_04905: AO356_04905 - 3-oxoadipate enol-lactonase, at 1,103,951 to 1,104,766 _04905 Position (kb) 1102 1103 1104Strain fitness (log2 ratio) -3 -2 -1 0 1at 1101.094 kb on - strandat 1101.199 kb on + strandat 1101.199 kb on + strandat 1101.200 kb on - strandat 1101.200 kb on - strandat 1101.200 kb on - strandat 1101.200 kb on - strandat 1101.206 kb on + strandat 1101.206 kb on + strandat 1101.206 kb on + strandat 1101.206 kb on + strandat 1101.206 kb on + strandat 1101.207 kb on - strandat 1101.207 kb on - strandat 1101.207 kb on - strandat 1101.207 kb on - strandat 1101.207 kb on - strandat 1101.207 kb on - strandat 1101.213 kb on - strandat 1101.213 kb on - strandat 1101.213 kb on - strandat 1101.234 kb on + strandat 1101.234 kb on + strandat 1101.235 kb on - strandat 1101.235 kb on - strandat 1101.235 kb on - strandat 1101.316 kb on + strandat 1101.316 kb on + strandat 1101.341 kb on + strandat 1101.341 kb on + strandat 1101.341 kb on + strandat 1101.341 kb on + strandat 1101.341 kb on + strandat 1101.341 kb on + strandat 1101.341 kb on + strandat 1101.342 kb on - strandat 1101.342 kb on - strandat 1101.342 kb on - strandat 1101.342 kb on - strandat 1101.342 kb on - strandat 1101.345 kb on + strandat 1101.345 kb on + strandat 1101.345 kb on + strandat 1101.345 kb on + strandat 1101.346 kb on - strandat 1101.346 kb on - strandat 1101.346 kb on - strandat 1101.346 kb on - strandat 1101.346 kb on - strandat 1101.346 kb on - strandat 1101.346 kb on - strandat 1101.372 kb on - strandat 1101.372 kb on - strandat 1101.810 kb on + strandat 1101.811 kb on - strandat 1101.811 kb on - strandat 1101.811 kb on - strandat 1101.811 kb on - strandat 1101.939 kb on + strandat 1102.074 kb on + strandat 1102.718 kb on + strand, within AO356_04895at 1102.738 kb on + strand, within AO356_04895at 1102.779 kb on - strand, within AO356_04895at 1102.779 kb on - strand, within AO356_04895at 1102.779 kb on - strand, within AO356_04895at 1103.210 kb on + strand, within AO356_04895at 1103.211 kb on - strand, within AO356_04895at 1103.211 kb on - strand, within AO356_04895at 1103.212 kb on + strand, within AO356_04895at 1103.213 kb on - strand, within AO356_04895at 1103.257 kb on + strandat 1103.280 kb on - strandat 1103.280 kb on - strandat 1103.280 kb on - strandat 1103.321 kb on + strandat 1103.339 kb on + strandat 1103.339 kb on + strandat 1103.339 kb on + strandat 1103.340 kb on - strandat 1103.365 kb on + strandat 1103.366 kb on - strandat 1103.549 kb on + strandat 1103.549 kb on + strandat 1103.550 kb on - strandat 1103.550 kb on - strandat 1103.630 kb on + strand, within AO356_04900at 1103.630 kb on + strand, within AO356_04900at 1103.631 kb on - strand, within AO356_04900at 1103.631 kb on - strand, within AO356_04900at 1103.742 kb on + strand, within AO356_04900at 1103.767 kb on - strand, within AO356_04900at 1103.903 kb on - strandat 1103.921 kb on + strandat 1103.921 kb on + strandat 1104.036 kb on + strand, within AO356_04905at 1104.036 kb on + strand, within AO356_04905at 1104.037 kb on - strand, within AO356_04905

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0032 mg/ml
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1,101,094 - -0.1
1,101,199 + +0.1
1,101,199 + +0.1
1,101,200 - +0.2
1,101,200 - -0.1
1,101,200 - +0.6
1,101,200 - -1.2
1,101,206 + +0.8
1,101,206 + +1.0
1,101,206 + -0.7
1,101,206 + -0.3
1,101,206 + -0.1
1,101,207 - +0.6
1,101,207 - +0.2
1,101,207 - +0.6
1,101,207 - -0.9
1,101,207 - +0.4
1,101,207 - +0.6
1,101,213 - +0.0
1,101,213 - +0.1
1,101,213 - -0.4
1,101,234 + +0.4
1,101,234 + +0.1
1,101,235 - -2.9
1,101,235 - -2.1
1,101,235 - -0.3
1,101,316 + -0.3
1,101,316 + -2.3
1,101,341 + +1.2
1,101,341 + +0.5
1,101,341 + +0.2
1,101,341 + -0.1
1,101,341 + -0.2
1,101,341 + -0.4
1,101,341 + -0.2
1,101,342 - -0.1
1,101,342 - -0.9
1,101,342 - -0.6
1,101,342 - -0.2
1,101,342 - -1.8
1,101,345 + +0.6
1,101,345 + +0.7
1,101,345 + -0.4
1,101,345 + -0.0
1,101,346 - -1.1
1,101,346 - +1.0
1,101,346 - +0.3
1,101,346 - -0.6
1,101,346 - -0.2
1,101,346 - +0.1
1,101,346 - -0.6
1,101,372 - -0.3
1,101,372 - +0.4
1,101,810 + +0.4
1,101,811 - -1.2
1,101,811 - +0.5
1,101,811 - -0.3
1,101,811 - -0.7
1,101,939 + +1.4
1,102,074 + +0.4
1,102,718 + AO356_04895 0.50 +0.5
1,102,738 + AO356_04895 0.52 +0.3
1,102,779 - AO356_04895 0.55 -0.3
1,102,779 - AO356_04895 0.55 +0.3
1,102,779 - AO356_04895 0.55 -0.3
1,103,210 + AO356_04895 0.89 +0.6
1,103,211 - AO356_04895 0.90 -0.5
1,103,211 - AO356_04895 0.90 -0.9
1,103,212 + AO356_04895 0.90 +0.3
1,103,213 - AO356_04895 0.90 +0.7
1,103,257 + +0.6
1,103,280 - -0.1
1,103,280 - -0.1
1,103,280 - -0.5
1,103,321 + -0.0
1,103,339 + +0.5
1,103,339 + +0.1
1,103,339 + -0.8
1,103,340 - -1.0
1,103,365 + +0.8
1,103,366 - +0.4
1,103,549 + +0.4
1,103,549 + -0.0
1,103,550 - -0.0
1,103,550 - -0.4
1,103,630 + AO356_04900 0.21 -0.8
1,103,630 + AO356_04900 0.21 +0.7
1,103,631 - AO356_04900 0.21 -0.3
1,103,631 - AO356_04900 0.21 +0.2
1,103,742 + AO356_04900 0.49 +1.4
1,103,767 - AO356_04900 0.56 +0.2
1,103,903 - -0.7
1,103,921 + -0.1
1,103,921 + +0.7
1,104,036 + AO356_04905 0.10 +0.4
1,104,036 + AO356_04905 0.10 -1.0
1,104,037 - AO356_04905 0.11 -1.9

Or see this region's nucleotide sequence