Experiment: Cisplatin 0.0032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02670 and AO356_02675 are separated by 13 nucleotides AO356_02675 and AO356_02680 are separated by 24 nucleotides
AO356_02670: AO356_02670 - hypothetical protein, at 586,083 to 587,189
_02670
AO356_02675: AO356_02675 - cell invasion protein, at 587,203 to 588,300
_02675
AO356_02680: AO356_02680 - cell invasion protein SipB, at 588,325 to 590,094
_02680
Position (kb) 587
588
589 Strain fitness (log2 ratio) -1
0
1
2 at 586.276 kb on - strand, within AO356_02670 at 586.276 kb on - strand, within AO356_02670 at 586.289 kb on - strand, within AO356_02670 at 586.486 kb on + strand, within AO356_02670 at 586.534 kb on - strand, within AO356_02670 at 586.624 kb on + strand, within AO356_02670 at 586.646 kb on - strand, within AO356_02670 at 586.719 kb on + strand, within AO356_02670 at 586.719 kb on + strand, within AO356_02670 at 587.154 kb on + strand at 587.154 kb on + strand at 587.155 kb on - strand at 587.159 kb on + strand at 587.171 kb on + strand at 587.171 kb on + strand at 587.172 kb on - strand at 587.172 kb on - strand at 587.189 kb on + strand at 587.189 kb on + strand at 587.636 kb on + strand, within AO356_02675 at 587.636 kb on + strand, within AO356_02675 at 587.636 kb on + strand, within AO356_02675 at 587.637 kb on - strand, within AO356_02675 at 587.716 kb on - strand, within AO356_02675 at 588.288 kb on - strand at 588.291 kb on + strand at 588.291 kb on + strand at 588.291 kb on + strand at 588.292 kb on - strand at 588.292 kb on - strand at 588.292 kb on - strand at 588.303 kb on + strand at 588.303 kb on + strand at 588.303 kb on + strand at 588.304 kb on - strand at 588.304 kb on - strand at 588.307 kb on + strand at 588.307 kb on + strand at 588.308 kb on - strand at 588.426 kb on - strand at 588.426 kb on - strand at 588.481 kb on + strand at 588.907 kb on + strand, within AO356_02680 at 588.907 kb on + strand, within AO356_02680 at 588.907 kb on + strand, within AO356_02680 at 588.908 kb on - strand, within AO356_02680 at 588.922 kb on - strand, within AO356_02680 at 588.922 kb on - strand, within AO356_02680 at 588.923 kb on + strand, within AO356_02680 at 588.923 kb on + strand, within AO356_02680 at 588.923 kb on + strand, within AO356_02680 at 588.923 kb on + strand, within AO356_02680 at 588.924 kb on - strand, within AO356_02680 at 588.924 kb on - strand, within AO356_02680 at 588.924 kb on - strand, within AO356_02680 at 589.190 kb on + strand, within AO356_02680
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0032 mg/ml remove 586,276 - AO356_02670 0.17 +0.4 586,276 - AO356_02670 0.17 -0.1 586,289 - AO356_02670 0.19 +0.3 586,486 + AO356_02670 0.36 +0.7 586,534 - AO356_02670 0.41 +0.6 586,624 + AO356_02670 0.49 +0.3 586,646 - AO356_02670 0.51 -1.4 586,719 + AO356_02670 0.57 -0.5 586,719 + AO356_02670 0.57 -0.4 587,154 + -0.7 587,154 + -0.4 587,155 - +0.6 587,159 + -0.1 587,171 + +0.7 587,171 + +1.1 587,172 - -0.4 587,172 - +0.4 587,189 + -0.0 587,189 + +1.0 587,636 + AO356_02675 0.39 -0.4 587,636 + AO356_02675 0.39 -1.6 587,636 + AO356_02675 0.39 -0.6 587,637 - AO356_02675 0.40 -1.0 587,716 - AO356_02675 0.47 -0.1 588,288 - -0.2 588,291 + +0.4 588,291 + +0.6 588,291 + +0.0 588,292 - -0.1 588,292 - +0.8 588,292 - -0.6 588,303 + -0.1 588,303 + +1.3 588,303 + -1.5 588,304 - +0.5 588,304 - +1.2 588,307 + -0.1 588,307 + +2.1 588,308 - +0.5 588,426 - +0.5 588,426 - -0.2 588,481 + +0.0 588,907 + AO356_02680 0.33 -1.3 588,907 + AO356_02680 0.33 +0.8 588,907 + AO356_02680 0.33 -0.5 588,908 - AO356_02680 0.33 +0.5 588,922 - AO356_02680 0.34 +0.0 588,922 - AO356_02680 0.34 -0.1 588,923 + AO356_02680 0.34 -0.1 588,923 + AO356_02680 0.34 +0.8 588,923 + AO356_02680 0.34 -0.3 588,923 + AO356_02680 0.34 -0.3 588,924 - AO356_02680 0.34 +0.4 588,924 - AO356_02680 0.34 -0.8 588,924 - AO356_02680 0.34 +0.0 589,190 + AO356_02680 0.49 -0.4
Or see this region's nucleotide sequence